miRNA display CGI


Results 81 - 100 of 161 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16219 5' -51.1 NC_004065.1 + 190174 0.68 0.99337
Target:  5'- aCgAUCGACGAUCGcGcgGACAgAGAa -3'
miRNA:   3'- gGgUGGCUGCUAGC-UuaCUGUgUCUg -5'
16219 5' -51.1 NC_004065.1 + 72967 0.68 0.99337
Target:  5'- aCCCGuucUCGACGAUgCGGAUGAuccccCACgaGGACg -3'
miRNA:   3'- -GGGU---GGCUGCUA-GCUUACU-----GUG--UCUG- -5'
16219 5' -51.1 NC_004065.1 + 158076 0.68 0.99337
Target:  5'- cUCCACCGGCGGcgUCGccuccGAC-CAGGCc -3'
miRNA:   3'- -GGGUGGCUGCU--AGCuua--CUGuGUCUG- -5'
16219 5' -51.1 NC_004065.1 + 53743 0.68 0.99337
Target:  5'- aUCA-CGACGAUCaGGAUGACgauGCAGAUc -3'
miRNA:   3'- gGGUgGCUGCUAG-CUUACUG---UGUCUG- -5'
16219 5' -51.1 NC_004065.1 + 198037 0.68 0.992399
Target:  5'- gUCGCCGGCGGUUccaaggGGAUGGaguuGCGGACg -3'
miRNA:   3'- gGGUGGCUGCUAG------CUUACUg---UGUCUG- -5'
16219 5' -51.1 NC_004065.1 + 8122 0.68 0.992399
Target:  5'- cCCCagaGCCgGGCGccGUCGAGgucGACGCAGAa -3'
miRNA:   3'- -GGG---UGG-CUGC--UAGCUUa--CUGUGUCUg -5'
16219 5' -51.1 NC_004065.1 + 5980 0.68 0.992399
Target:  5'- aCCUGCCGGCGA-CGAcc--CGCAGAUg -3'
miRNA:   3'- -GGGUGGCUGCUaGCUuacuGUGUCUG- -5'
16219 5' -51.1 NC_004065.1 + 67755 0.68 0.992399
Target:  5'- gCCgCGuCCGACGGcgugaCGAAcGGCGCGGGCg -3'
miRNA:   3'- -GG-GU-GGCUGCUa----GCUUaCUGUGUCUG- -5'
16219 5' -51.1 NC_004065.1 + 66994 0.68 0.992399
Target:  5'- gUCCACUGACGGaggUCGAacaugcggGUGACAUucuGAUg -3'
miRNA:   3'- -GGGUGGCUGCU---AGCU--------UACUGUGu--CUG- -5'
16219 5' -51.1 NC_004065.1 + 197734 0.68 0.992399
Target:  5'- gCU-CCGACGAggagacCGAG-GACGCGGACa -3'
miRNA:   3'- gGGuGGCUGCUa-----GCUUaCUGUGUCUG- -5'
16219 5' -51.1 NC_004065.1 + 133402 0.68 0.992296
Target:  5'- aCCGCCGGCGA-CGAG-GACGaagggguCAGAUc -3'
miRNA:   3'- gGGUGGCUGCUaGCUUaCUGU-------GUCUG- -5'
16219 5' -51.1 NC_004065.1 + 171471 0.68 0.991319
Target:  5'- aCUACgGACGGaCGGAcgGACGCAGcACg -3'
miRNA:   3'- gGGUGgCUGCUaGCUUa-CUGUGUC-UG- -5'
16219 5' -51.1 NC_004065.1 + 66556 0.69 0.990615
Target:  5'- gCCGCCGACGGagcucgagcuacccaUCGAA-GugGCcGACu -3'
miRNA:   3'- gGGUGGCUGCU---------------AGCUUaCugUGuCUG- -5'
16219 5' -51.1 NC_004065.1 + 168708 0.69 0.990121
Target:  5'- uCUCGCCGuCGAgugCGAGgucGACGgGGGCg -3'
miRNA:   3'- -GGGUGGCuGCUa--GCUUa--CUGUgUCUG- -5'
16219 5' -51.1 NC_004065.1 + 56483 0.69 0.990121
Target:  5'- cCCCGCCGAaGAUaCG-GUGAUGCGGGu -3'
miRNA:   3'- -GGGUGGCUgCUA-GCuUACUGUGUCUg -5'
16219 5' -51.1 NC_004065.1 + 15418 0.69 0.990121
Target:  5'- -aCGCCGGCGGUCGGcucaAUuACACGGGa -3'
miRNA:   3'- ggGUGGCUGCUAGCU----UAcUGUGUCUg -5'
16219 5' -51.1 NC_004065.1 + 199112 0.69 0.990121
Target:  5'- uCCCGgCGAUG-UCGAcgGACACGagugcGACc -3'
miRNA:   3'- -GGGUgGCUGCuAGCUuaCUGUGU-----CUG- -5'
16219 5' -51.1 NC_004065.1 + 185981 0.69 0.990121
Target:  5'- --uGgCGAUGAUgCGGAUGGCGCGGAUc -3'
miRNA:   3'- gggUgGCUGCUA-GCUUACUGUGUCUG- -5'
16219 5' -51.1 NC_004065.1 + 58591 0.69 0.990121
Target:  5'- gCUCGCCGACGAcggcggagUCGAGaucGACGCGcGCg -3'
miRNA:   3'- -GGGUGGCUGCU--------AGCUUa--CUGUGUcUG- -5'
16219 5' -51.1 NC_004065.1 + 111912 0.69 0.988797
Target:  5'- gUCCGCgCGGCGA-CGAGaGACGCcauGGGCg -3'
miRNA:   3'- -GGGUG-GCUGCUaGCUUaCUGUG---UCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.