miRNA display CGI


Results 1 - 20 of 161 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16219 5' -51.1 NC_004065.1 + 1 0.71 0.966882
Target:  5'- cCCCcCCGGCcGUCuGAGUGcGCGCGGGCc -3'
miRNA:   3'- -GGGuGGCUGcUAG-CUUAC-UGUGUCUG- -5'
16219 5' -51.1 NC_004065.1 + 385 0.68 0.994239
Target:  5'- gCCGCCGGCcg--GGAUGGCGCAcgaGACg -3'
miRNA:   3'- gGGUGGCUGcuagCUUACUGUGU---CUG- -5'
16219 5' -51.1 NC_004065.1 + 1323 0.67 0.996252
Target:  5'- --aAUgGACGAUCGAGUGGuacauccccagccUACAGGCg -3'
miRNA:   3'- gggUGgCUGCUAGCUUACU-------------GUGUCUG- -5'
16219 5' -51.1 NC_004065.1 + 5444 0.7 0.98188
Target:  5'- cCCCGaCGGCGAUCGGacguacuacGUGAacgccuaCACGGGCg -3'
miRNA:   3'- -GGGUgGCUGCUAGCU---------UACU-------GUGUCUG- -5'
16219 5' -51.1 NC_004065.1 + 5980 0.68 0.992399
Target:  5'- aCCUGCCGGCGA-CGAcc--CGCAGAUg -3'
miRNA:   3'- -GGGUGGCUGCUaGCUuacuGUGUCUG- -5'
16219 5' -51.1 NC_004065.1 + 7312 0.66 0.999076
Target:  5'- gCUC-CUGACGAUCGAgccgGUGGUACcGGACg -3'
miRNA:   3'- -GGGuGGCUGCUAGCU----UACUGUG-UCUG- -5'
16219 5' -51.1 NC_004065.1 + 7611 0.73 0.907432
Target:  5'- cCUUGCCGACGAUCGAAUGucgacccgucCACGuGGCg -3'
miRNA:   3'- -GGGUGGCUGCUAGCUUACu---------GUGU-CUG- -5'
16219 5' -51.1 NC_004065.1 + 8122 0.68 0.992399
Target:  5'- cCCCagaGCCgGGCGccGUCGAGgucGACGCAGAa -3'
miRNA:   3'- -GGG---UGG-CUGC--UAGCUUa--CUGUGUCUg -5'
16219 5' -51.1 NC_004065.1 + 9118 0.7 0.980005
Target:  5'- aCCACaagaucGCGAUCGAGcaccgaGACACGGACc -3'
miRNA:   3'- gGGUGgc----UGCUAGCUUa-----CUGUGUCUG- -5'
16219 5' -51.1 NC_004065.1 + 14428 0.7 0.98208
Target:  5'- uCUCACUGACGGUCG--UGACuuCGGAg -3'
miRNA:   3'- -GGGUGGCUGCUAGCuuACUGu-GUCUg -5'
16219 5' -51.1 NC_004065.1 + 15418 0.69 0.990121
Target:  5'- -aCGCCGGCGGUCGGcucaAUuACACGGGa -3'
miRNA:   3'- ggGUGGCUGCUAGCU----UAcUGUGUCUg -5'
16219 5' -51.1 NC_004065.1 + 16180 0.66 0.998883
Target:  5'- aCCCGCC-AUGAaucuagCGggUGAUGguGACu -3'
miRNA:   3'- -GGGUGGcUGCUa-----GCuuACUGUguCUG- -5'
16219 5' -51.1 NC_004065.1 + 17090 0.66 0.998655
Target:  5'- aCCuCCGACGA--GggUGACAC-GAUc -3'
miRNA:   3'- gGGuGGCUGCUagCuuACUGUGuCUG- -5'
16219 5' -51.1 NC_004065.1 + 17655 0.66 0.998655
Target:  5'- -gCACCGGa-GUCGGAUGACgACcGACg -3'
miRNA:   3'- ggGUGGCUgcUAGCUUACUG-UGuCUG- -5'
16219 5' -51.1 NC_004065.1 + 18849 0.69 0.983988
Target:  5'- cCCCACCGACuGA-CGAGUgcGACAUcccGGCa -3'
miRNA:   3'- -GGGUGGCUG-CUaGCUUA--CUGUGu--CUG- -5'
16219 5' -51.1 NC_004065.1 + 19413 0.72 0.939716
Target:  5'- aCCCGCCGGCG-UCGGcgGAggugcCGgAGGCa -3'
miRNA:   3'- -GGGUGGCUGCuAGCUuaCU-----GUgUCUG- -5'
16219 5' -51.1 NC_004065.1 + 19794 0.66 0.998655
Target:  5'- gUCguCCG-CGGUCGucucGUGGCACAGGg -3'
miRNA:   3'- -GGguGGCuGCUAGCu---UACUGUGUCUg -5'
16219 5' -51.1 NC_004065.1 + 19900 0.66 0.99858
Target:  5'- gCCGCCGAgGaAUCGAagacgguagcggugGUGGCggugguuacgACGGACa -3'
miRNA:   3'- gGGUGGCUgC-UAGCU--------------UACUG----------UGUCUG- -5'
16219 5' -51.1 NC_004065.1 + 22604 0.73 0.913399
Target:  5'- aCCGCCuGGCGAgUCGA---GCACGGACg -3'
miRNA:   3'- gGGUGG-CUGCU-AGCUuacUGUGUCUG- -5'
16219 5' -51.1 NC_004065.1 + 22842 0.7 0.977756
Target:  5'- gUCACCGACGA-CGGAgu-CugGGACg -3'
miRNA:   3'- gGGUGGCUGCUaGCUUacuGugUCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.