miRNA display CGI


Results 21 - 40 of 161 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16219 5' -51.1 NC_004065.1 + 23057 0.67 0.996795
Target:  5'- aCUACCuGACguucagagugaagGAUCGGAgaGACGCGGACc -3'
miRNA:   3'- gGGUGG-CUG-------------CUAGCUUa-CUGUGUCUG- -5'
16219 5' -51.1 NC_004065.1 + 25066 0.71 0.969896
Target:  5'- gCCGuCUGACGAUCGAccGAUcgACAGAg -3'
miRNA:   3'- gGGU-GGCUGCUAGCUuaCUG--UGUCUg -5'
16219 5' -51.1 NC_004065.1 + 26280 0.72 0.934923
Target:  5'- gUCACCGACGAcucgUCGGAUGAUgAC-GACg -3'
miRNA:   3'- gGGUGGCUGCU----AGCUUACUG-UGuCUG- -5'
16219 5' -51.1 NC_004065.1 + 27903 0.67 0.995701
Target:  5'- uCCUGCCGACGggCGAGUGGguggucgugUugGGGg -3'
miRNA:   3'- -GGGUGGCUGCuaGCUUACU---------GugUCUg -5'
16219 5' -51.1 NC_004065.1 + 28626 0.68 0.995013
Target:  5'- aCCCGCCG-CGAcgcaucugugcgUCGAcGUGGCACcccccggcgAGGCg -3'
miRNA:   3'- -GGGUGGCuGCU------------AGCU-UACUGUG---------UCUG- -5'
16219 5' -51.1 NC_004065.1 + 28888 0.67 0.997725
Target:  5'- aCUGCUGGCGccccgaGUCGGcgGACaagGCGGACa -3'
miRNA:   3'- gGGUGGCUGC------UAGCUuaCUG---UGUCUG- -5'
16219 5' -51.1 NC_004065.1 + 29257 0.66 0.99839
Target:  5'- gCCGCgCGACGAgagagCGAccGACGCGuGAg -3'
miRNA:   3'- gGGUG-GCUGCUa----GCUuaCUGUGU-CUg -5'
16219 5' -51.1 NC_004065.1 + 29704 0.66 0.999076
Target:  5'- aUCGCCGGuCGAgCGGcgGACGCcgcccaGGACg -3'
miRNA:   3'- gGGUGGCU-GCUaGCUuaCUGUG------UCUG- -5'
16219 5' -51.1 NC_004065.1 + 30698 0.67 0.997725
Target:  5'- gUCCGuCgCGACG-UCGAG-GugGCGGACg -3'
miRNA:   3'- -GGGU-G-GCUGCuAGCUUaCugUGUCUG- -5'
16219 5' -51.1 NC_004065.1 + 30759 0.76 0.783428
Target:  5'- gCCCucggaauCCGA-GGUCGGcgGACGCGGACg -3'
miRNA:   3'- -GGGu------GGCUgCUAGCUuaCUGUGUCUG- -5'
16219 5' -51.1 NC_004065.1 + 30789 0.73 0.913399
Target:  5'- -nCGCCGACGAUgaCGAcUGACggACGGACg -3'
miRNA:   3'- ggGUGGCUGCUA--GCUuACUG--UGUCUG- -5'
16219 5' -51.1 NC_004065.1 + 32253 0.7 0.979788
Target:  5'- -aCACCGGCGAUCcGAUGAagaccuaCugGGACc -3'
miRNA:   3'- ggGUGGCUGCUAGcUUACU-------GugUCUG- -5'
16219 5' -51.1 NC_004065.1 + 36620 0.74 0.874177
Target:  5'- cCCCACCGAUGA-CGAucuggggcAUGAgGCAGGg -3'
miRNA:   3'- -GGGUGGCUGCUaGCU--------UACUgUGUCUg -5'
16219 5' -51.1 NC_004065.1 + 38960 0.67 0.996845
Target:  5'- gCgACCGGCGcggggguucugGUgGAagGUGACGCAGAUg -3'
miRNA:   3'- gGgUGGCUGC-----------UAgCU--UACUGUGUCUG- -5'
16219 5' -51.1 NC_004065.1 + 41409 0.71 0.963661
Target:  5'- gCCGCCGGCGAcacggUCGcc-GugACGGACc -3'
miRNA:   3'- gGGUGGCUGCU-----AGCuuaCugUGUCUG- -5'
16219 5' -51.1 NC_004065.1 + 42413 0.71 0.966882
Target:  5'- -aCGCCG-UGAUCGAGUGGgACGuGACg -3'
miRNA:   3'- ggGUGGCuGCUAGCUUACUgUGU-CUG- -5'
16219 5' -51.1 NC_004065.1 + 43138 0.67 0.995701
Target:  5'- aCCGCCGGCcg-CGGAaGACACgcgcacGGACg -3'
miRNA:   3'- gGGUGGCUGcuaGCUUaCUGUG------UCUG- -5'
16219 5' -51.1 NC_004065.1 + 44831 0.69 0.987339
Target:  5'- aCCACCG-CGAcaCGGAcagcGACACGGGCc -3'
miRNA:   3'- gGGUGGCuGCUa-GCUUa---CUGUGUCUG- -5'
16219 5' -51.1 NC_004065.1 + 48645 0.71 0.969604
Target:  5'- aCCAgCGACguggcgaagauggGAUCGAGccGACGCAGGCc -3'
miRNA:   3'- gGGUgGCUG-------------CUAGCUUa-CUGUGUCUG- -5'
16219 5' -51.1 NC_004065.1 + 50865 0.75 0.859352
Target:  5'- gCCuCUGACGGagagaUCGAcgGGCACGGGCg -3'
miRNA:   3'- gGGuGGCUGCU-----AGCUuaCUGUGUCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.