miRNA display CGI


Results 61 - 80 of 161 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16219 5' -51.1 NC_004065.1 + 75891 0.67 0.997725
Target:  5'- aCCGCCcggGGCGAUCGucccaugugGACACAcGAUc -3'
miRNA:   3'- gGGUGG---CUGCUAGCuua------CUGUGU-CUG- -5'
16219 5' -51.1 NC_004065.1 + 75957 0.68 0.994239
Target:  5'- aCUCugCG-CGAUCcAggGACACGGAUg -3'
miRNA:   3'- -GGGugGCuGCUAGcUuaCUGUGUCUG- -5'
16219 5' -51.1 NC_004065.1 + 76018 0.66 0.998655
Target:  5'- gCCGCCGcCGccgCGAAcacGACAgAGACg -3'
miRNA:   3'- gGGUGGCuGCua-GCUUa--CUGUgUCUG- -5'
16219 5' -51.1 NC_004065.1 + 78315 0.67 0.996845
Target:  5'- -aCugCGugGG-CGAcccGACGCAGACg -3'
miRNA:   3'- ggGugGCugCUaGCUua-CUGUGUCUG- -5'
16219 5' -51.1 NC_004065.1 + 79321 0.75 0.851633
Target:  5'- uCCCACCGGCGG-CGGuucGUGcGCGCGGAg -3'
miRNA:   3'- -GGGUGGCUGCUaGCU---UAC-UGUGUCUg -5'
16219 5' -51.1 NC_004065.1 + 80018 0.71 0.963661
Target:  5'- gCCGCCaGACG-UCGGAUGACGgcCAGGu -3'
miRNA:   3'- gGGUGG-CUGCuAGCUUACUGU--GUCUg -5'
16219 5' -51.1 NC_004065.1 + 80395 0.68 0.994239
Target:  5'- gCCUGCCGACGG-CGccGGUGACGguGgACg -3'
miRNA:   3'- -GGGUGGCUGCUaGC--UUACUGUguC-UG- -5'
16219 5' -51.1 NC_004065.1 + 80880 0.67 0.997315
Target:  5'- gCCCcCCGACGAagaucaggcgacUCGAcgaaacGACAcCAGGCa -3'
miRNA:   3'- -GGGuGGCUGCU------------AGCUua----CUGU-GUCUG- -5'
16219 5' -51.1 NC_004065.1 + 80976 0.67 0.99631
Target:  5'- cUCCACCaaGAgGGUgGAGUaGCACAGAUu -3'
miRNA:   3'- -GGGUGG--CUgCUAgCUUAcUGUGUCUG- -5'
16219 5' -51.1 NC_004065.1 + 81032 0.66 0.999076
Target:  5'- --gACUGGCGAaaUCGAAc-ACGCAGACg -3'
miRNA:   3'- gggUGGCUGCU--AGCUUacUGUGUCUG- -5'
16219 5' -51.1 NC_004065.1 + 81675 0.66 0.99839
Target:  5'- -aCGCUGACGGacCGggUGACcaaGGACg -3'
miRNA:   3'- ggGUGGCUGCUa-GCuuACUGug-UCUG- -5'
16219 5' -51.1 NC_004065.1 + 82126 0.69 0.983988
Target:  5'- cCCgGCUGACGuAUCcGGcGGCGCGGACg -3'
miRNA:   3'- -GGgUGGCUGC-UAGcUUaCUGUGUCUG- -5'
16219 5' -51.1 NC_004065.1 + 85365 0.72 0.948604
Target:  5'- uCCCgaACCGAacgaGAUC-AGUaGACACAGACa -3'
miRNA:   3'- -GGG--UGGCUg---CUAGcUUA-CUGUGUCUG- -5'
16219 5' -51.1 NC_004065.1 + 87041 0.69 0.988797
Target:  5'- aCUGCCGaaagacGCGGUCGuagGACACcAGACa -3'
miRNA:   3'- gGGUGGC------UGCUAGCuuaCUGUG-UCUG- -5'
16219 5' -51.1 NC_004065.1 + 87696 0.67 0.997315
Target:  5'- gCCGCCGGCGuUCGAGaccuCGCGGuCg -3'
miRNA:   3'- gGGUGGCUGCuAGCUUacu-GUGUCuG- -5'
16219 5' -51.1 NC_004065.1 + 88432 0.67 0.995504
Target:  5'- gCCCGCCGccgucgcguuggugGCGGUCGccucGCGCAGAg -3'
miRNA:   3'- -GGGUGGC--------------UGCUAGCuuacUGUGUCUg -5'
16219 5' -51.1 NC_004065.1 + 93704 0.67 0.995701
Target:  5'- aCCCACCGGCuccuuAUUGAc-GAC-CAGACa -3'
miRNA:   3'- -GGGUGGCUGc----UAGCUuaCUGuGUCUG- -5'
16219 5' -51.1 NC_004065.1 + 94189 0.67 0.997315
Target:  5'- aCCCAUCGACGAggUCGccaGAuCGCcGACg -3'
miRNA:   3'- -GGGUGGCUGCU--AGCuuaCU-GUGuCUG- -5'
16219 5' -51.1 NC_004065.1 + 95898 0.72 0.934923
Target:  5'- aCCCACagaauGACGcucguUUGAcgGGCGCGGACg -3'
miRNA:   3'- -GGGUGg----CUGCu----AGCUuaCUGUGUCUG- -5'
16219 5' -51.1 NC_004065.1 + 96571 0.69 0.983988
Target:  5'- gUCCGCCGACGAgccgCGAcgcGugGC-GACg -3'
miRNA:   3'- -GGGUGGCUGCUa---GCUua-CugUGuCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.