miRNA display CGI


Results 1 - 20 of 161 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16219 5' -51.1 NC_004065.1 + 230018 0.71 0.966882
Target:  5'- cCCCcCCGGCcGUCuGAGUGcGCGCGGGCc -3'
miRNA:   3'- -GGGuGGCUGcUAG-CUUAC-UGUGUCUG- -5'
16219 5' -51.1 NC_004065.1 + 227504 0.71 0.96657
Target:  5'- aCCAgCCGACGGUUGAcggugaggauuuaGUGGCAUguuAGACc -3'
miRNA:   3'- gGGU-GGCUGCUAGCU-------------UACUGUG---UCUG- -5'
16219 5' -51.1 NC_004065.1 + 224851 0.67 0.997725
Target:  5'- uUCC-CCGACGGUCugcGGUGGCAguuugagccaucCGGACg -3'
miRNA:   3'- -GGGuGGCUGCUAGc--UUACUGU------------GUCUG- -5'
16219 5' -51.1 NC_004065.1 + 218127 0.66 0.998655
Target:  5'- gCCCACUuucCGggCGAA-GACACuAGACa -3'
miRNA:   3'- -GGGUGGcu-GCuaGCUUaCUGUG-UCUG- -5'
16219 5' -51.1 NC_004065.1 + 213909 0.72 0.948604
Target:  5'- aCCACCGGCGuGUCGA---GCACGGuCa -3'
miRNA:   3'- gGGUGGCUGC-UAGCUuacUGUGUCuG- -5'
16219 5' -51.1 NC_004065.1 + 208708 0.67 0.997315
Target:  5'- aCCGCCGcgcacgccgagGCGGUCGu---GCACGGAUg -3'
miRNA:   3'- gGGUGGC-----------UGCUAGCuuacUGUGUCUG- -5'
16219 5' -51.1 NC_004065.1 + 207739 1.11 0.01085
Target:  5'- cCCCACCGACGAUCGAAUGACACAGACc -3'
miRNA:   3'- -GGGUGGCUGCUAGCUUACUGUGUCUG- -5'
16219 5' -51.1 NC_004065.1 + 205428 0.67 0.996845
Target:  5'- -aCACCGGCGG-CGGcgGugGCGgcGACg -3'
miRNA:   3'- ggGUGGCUGCUaGCUuaCugUGU--CUG- -5'
16219 5' -51.1 NC_004065.1 + 203621 0.67 0.996845
Target:  5'- gCCGCCGugGcggaGUUGGA-GGCGgGGGCa -3'
miRNA:   3'- gGGUGGCugC----UAGCUUaCUGUgUCUG- -5'
16219 5' -51.1 NC_004065.1 + 200845 0.67 0.995636
Target:  5'- aCCCGguggaguUCGGCG-UCGAcgggGGCGCGGGCg -3'
miRNA:   3'- -GGGU-------GGCUGCuAGCUua--CUGUGUCUG- -5'
16219 5' -51.1 NC_004065.1 + 199112 0.69 0.990121
Target:  5'- uCCCGgCGAUG-UCGAcgGACACGagugcGACc -3'
miRNA:   3'- -GGGUgGCUGCuAGCUuaCUGUGU-----CUG- -5'
16219 5' -51.1 NC_004065.1 + 198773 0.69 0.988797
Target:  5'- aCCGCagaGACGAUCG---GACACGGuCg -3'
miRNA:   3'- gGGUGg--CUGCUAGCuuaCUGUGUCuG- -5'
16219 5' -51.1 NC_004065.1 + 198037 0.68 0.992399
Target:  5'- gUCGCCGGCGGUUccaaggGGAUGGaguuGCGGACg -3'
miRNA:   3'- gGGUGGCUGCUAG------CUUACUg---UGUCUG- -5'
16219 5' -51.1 NC_004065.1 + 197734 0.68 0.992399
Target:  5'- gCU-CCGACGAggagacCGAG-GACGCGGACa -3'
miRNA:   3'- gGGuGGCUGCUa-----GCUUaCUGUGUCUG- -5'
16219 5' -51.1 NC_004065.1 + 197537 0.66 0.998082
Target:  5'- -aCACCGA-GAUCGucaaggGACACuGGCg -3'
miRNA:   3'- ggGUGGCUgCUAGCuua---CUGUGuCUG- -5'
16219 5' -51.1 NC_004065.1 + 195116 0.69 0.988797
Target:  5'- gCUCGCCGGCGGugUCGccgcaGCACAGAUa -3'
miRNA:   3'- -GGGUGGCUGCU--AGCuuac-UGUGUCUG- -5'
16219 5' -51.1 NC_004065.1 + 194421 0.66 0.998082
Target:  5'- gCCGCCGugGAUCccgcaccGACACcgccGACg -3'
miRNA:   3'- gGGUGGCugCUAGcuua---CUGUGu---CUG- -5'
16219 5' -51.1 NC_004065.1 + 194041 0.7 0.98208
Target:  5'- gCCGCCGuCGAacaUGuccAUGGCGCGGACg -3'
miRNA:   3'- gGGUGGCuGCUa--GCu--UACUGUGUCUG- -5'
16219 5' -51.1 NC_004065.1 + 193854 0.66 0.998082
Target:  5'- cCCCcCCG-CGAgCGGcUGACACAG-Cg -3'
miRNA:   3'- -GGGuGGCuGCUaGCUuACUGUGUCuG- -5'
16219 5' -51.1 NC_004065.1 + 193488 0.67 0.99631
Target:  5'- cCCCGaugUCGGCGGUCGAGuaguuccaccUGGCGgAGAa -3'
miRNA:   3'- -GGGU---GGCUGCUAGCUU----------ACUGUgUCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.