miRNA display CGI


Results 41 - 60 of 161 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16219 5' -51.1 NC_004065.1 + 147703 0.73 0.905596
Target:  5'- aCCCACCGGC--UCGGAUGAgcuggacgccgcgcUACGGGCc -3'
miRNA:   3'- -GGGUGGCUGcuAGCUUACU--------------GUGUCUG- -5'
16219 5' -51.1 NC_004065.1 + 50865 0.75 0.859352
Target:  5'- gCCuCUGACGGagagaUCGAcgGGCACGGGCg -3'
miRNA:   3'- gGGuGGCUGCU-----AGCUuaCUGUGUCUG- -5'
16219 5' -51.1 NC_004065.1 + 171922 0.76 0.818865
Target:  5'- aCCACCGA-GAUCGAuacGAuCGCGGACg -3'
miRNA:   3'- gGGUGGCUgCUAGCUua-CU-GUGUCUG- -5'
16219 5' -51.1 NC_004065.1 + 70825 0.77 0.764872
Target:  5'- uCCUGgCGGCGAUCGAAgagaagaaaGACGCGGACc -3'
miRNA:   3'- -GGGUgGCUGCUAGCUUa--------CUGUGUCUG- -5'
16219 5' -51.1 NC_004065.1 + 172579 0.79 0.67666
Target:  5'- gCCCGCCGACGcuaaGAAaagaGACACAGACc -3'
miRNA:   3'- -GGGUGGCUGCuag-CUUa---CUGUGUCUG- -5'
16219 5' -51.1 NC_004065.1 + 80018 0.71 0.963661
Target:  5'- gCCGCCaGACG-UCGGAUGACGgcCAGGu -3'
miRNA:   3'- gGGUGG-CUGCuAGCUUACUGU--GUCUg -5'
16219 5' -51.1 NC_004065.1 + 227504 0.71 0.96657
Target:  5'- aCCAgCCGACGGUUGAcggugaggauuuaGUGGCAUguuAGACc -3'
miRNA:   3'- gGGU-GGCUGCUAGCU-------------UACUGUG---UCUG- -5'
16219 5' -51.1 NC_004065.1 + 66590 0.69 0.983988
Target:  5'- gCCUGCCGcACGAUg----GACGCGGACa -3'
miRNA:   3'- -GGGUGGC-UGCUAgcuuaCUGUGUCUG- -5'
16219 5' -51.1 NC_004065.1 + 96571 0.69 0.983988
Target:  5'- gUCCGCCGACGAgccgCGAcgcGugGC-GACg -3'
miRNA:   3'- -GGGUGGCUGCUa---GCUua-CugUGuCUG- -5'
16219 5' -51.1 NC_004065.1 + 194041 0.7 0.98208
Target:  5'- gCCGCCGuCGAacaUGuccAUGGCGCGGACg -3'
miRNA:   3'- gGGUGGCuGCUa--GCu--UACUGUGUCUG- -5'
16219 5' -51.1 NC_004065.1 + 9118 0.7 0.980005
Target:  5'- aCCACaagaucGCGAUCGAGcaccgaGACACGGACc -3'
miRNA:   3'- gGGUGgc----UGCUAGCUUa-----CUGUGUCUG- -5'
16219 5' -51.1 NC_004065.1 + 64409 0.7 0.977756
Target:  5'- aCCUAaaGACGGUCGAGaagcUGgucgcggccACGCAGACg -3'
miRNA:   3'- -GGGUggCUGCUAGCUU----AC---------UGUGUCUG- -5'
16219 5' -51.1 NC_004065.1 + 163293 0.7 0.975327
Target:  5'- gCCGCCGG-GGUCcGAcGGCACGGGCg -3'
miRNA:   3'- gGGUGGCUgCUAGcUUaCUGUGUCUG- -5'
16219 5' -51.1 NC_004065.1 + 99616 0.7 0.972709
Target:  5'- uUCCGCCgGACGGUCGcGAUacccGGCGgGGACg -3'
miRNA:   3'- -GGGUGG-CUGCUAGC-UUA----CUGUgUCUG- -5'
16219 5' -51.1 NC_004065.1 + 25066 0.71 0.969896
Target:  5'- gCCGuCUGACGAUCGAccGAUcgACAGAg -3'
miRNA:   3'- gGGU-GGCUGCUAGCUuaCUG--UGUCUg -5'
16219 5' -51.1 NC_004065.1 + 48645 0.71 0.969604
Target:  5'- aCCAgCGACguggcgaagauggGAUCGAGccGACGCAGGCc -3'
miRNA:   3'- gGGUgGCUG-------------CUAGCUUa-CUGUGUCUG- -5'
16219 5' -51.1 NC_004065.1 + 42413 0.71 0.966882
Target:  5'- -aCGCCG-UGAUCGAGUGGgACGuGACg -3'
miRNA:   3'- ggGUGGCuGCUAGCUUACUgUGU-CUG- -5'
16219 5' -51.1 NC_004065.1 + 230018 0.71 0.966882
Target:  5'- cCCCcCCGGCcGUCuGAGUGcGCGCGGGCc -3'
miRNA:   3'- -GGGuGGCUGcUAG-CUUAC-UGUGUCUG- -5'
16219 5' -51.1 NC_004065.1 + 176223 0.71 0.966882
Target:  5'- uUCACCGGCucUCGGcgGACcgcGCAGACc -3'
miRNA:   3'- gGGUGGCUGcuAGCUuaCUG---UGUCUG- -5'
16219 5' -51.1 NC_004065.1 + 1 0.71 0.966882
Target:  5'- cCCCcCCGGCcGUCuGAGUGcGCGCGGGCc -3'
miRNA:   3'- -GGGuGGCUGcUAG-CUUAC-UGUGUCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.