miRNA display CGI


Results 61 - 80 of 161 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16219 5' -51.1 NC_004065.1 + 82126 0.69 0.983988
Target:  5'- cCCgGCUGACGuAUCcGGcGGCGCGGACg -3'
miRNA:   3'- -GGgUGGCUGC-UAGcUUaCUGUGUCUG- -5'
16219 5' -51.1 NC_004065.1 + 18849 0.69 0.983988
Target:  5'- cCCCACCGACuGA-CGAGUgcGACAUcccGGCa -3'
miRNA:   3'- -GGGUGGCUG-CUaGCUUA--CUGUGu--CUG- -5'
16219 5' -51.1 NC_004065.1 + 66590 0.69 0.983988
Target:  5'- gCCUGCCGcACGAUg----GACGCGGACa -3'
miRNA:   3'- -GGGUGGC-UGCUAgcuuaCUGUGUCUG- -5'
16219 5' -51.1 NC_004065.1 + 96571 0.69 0.983988
Target:  5'- gUCCGCCGACGAgccgCGAcgcGugGC-GACg -3'
miRNA:   3'- -GGGUGGCUGCUa---GCUua-CugUGuCUG- -5'
16219 5' -51.1 NC_004065.1 + 194041 0.7 0.98208
Target:  5'- gCCGCCGuCGAacaUGuccAUGGCGCGGACg -3'
miRNA:   3'- gGGUGGCuGCUa--GCu--UACUGUGUCUG- -5'
16219 5' -51.1 NC_004065.1 + 42413 0.71 0.966882
Target:  5'- -aCGCCG-UGAUCGAGUGGgACGuGACg -3'
miRNA:   3'- ggGUGGCuGCUAGCUUACUgUGU-CUG- -5'
16219 5' -51.1 NC_004065.1 + 48645 0.71 0.969604
Target:  5'- aCCAgCGACguggcgaagauggGAUCGAGccGACGCAGGCc -3'
miRNA:   3'- gGGUgGCUG-------------CUAGCUUa-CUGUGUCUG- -5'
16219 5' -51.1 NC_004065.1 + 25066 0.71 0.969896
Target:  5'- gCCGuCUGACGAUCGAccGAUcgACAGAg -3'
miRNA:   3'- gGGU-GGCUGCUAGCUuaCUG--UGUCUg -5'
16219 5' -51.1 NC_004065.1 + 99616 0.7 0.972709
Target:  5'- uUCCGCCgGACGGUCGcGAUacccGGCGgGGACg -3'
miRNA:   3'- -GGGUGG-CUGCUAGC-UUA----CUGUgUCUG- -5'
16219 5' -51.1 NC_004065.1 + 163293 0.7 0.975327
Target:  5'- gCCGCCGG-GGUCcGAcGGCACGGGCg -3'
miRNA:   3'- gGGUGGCUgCUAGcUUaCUGUGUCUG- -5'
16219 5' -51.1 NC_004065.1 + 64409 0.7 0.977756
Target:  5'- aCCUAaaGACGGUCGAGaagcUGgucgcggccACGCAGACg -3'
miRNA:   3'- -GGGUggCUGCUAGCUU----AC---------UGUGUCUG- -5'
16219 5' -51.1 NC_004065.1 + 9118 0.7 0.980005
Target:  5'- aCCACaagaucGCGAUCGAGcaccgaGACACGGACc -3'
miRNA:   3'- gGGUGgc----UGCUAGCUUa-----CUGUGUCUG- -5'
16219 5' -51.1 NC_004065.1 + 22604 0.73 0.913399
Target:  5'- aCCGCCuGGCGAgUCGA---GCACGGACg -3'
miRNA:   3'- gGGUGG-CUGCU-AGCUuacUGUGUCUG- -5'
16219 5' -51.1 NC_004065.1 + 7611 0.73 0.907432
Target:  5'- cCUUGCCGACGAUCGAAUGucgacccgucCACGuGGCg -3'
miRNA:   3'- -GGGUGGCUGCUAGCUUACu---------GUGU-CUG- -5'
16219 5' -51.1 NC_004065.1 + 36620 0.74 0.874177
Target:  5'- cCCCACCGAUGA-CGAucuggggcAUGAgGCAGGg -3'
miRNA:   3'- -GGGUGGCUGCUaGCU--------UACUgUGUCUg -5'
16219 5' -51.1 NC_004065.1 + 130168 0.75 0.851633
Target:  5'- cCUCGCacggCGGCGAUCGg--GGCGCAGACg -3'
miRNA:   3'- -GGGUG----GCUGCUAGCuuaCUGUGUCUG- -5'
16219 5' -51.1 NC_004065.1 + 79321 0.75 0.851633
Target:  5'- uCCCACCGGCGG-CGGuucGUGcGCGCGGAg -3'
miRNA:   3'- -GGGUGGCUGCUaGCU---UAC-UGUGUCUg -5'
16219 5' -51.1 NC_004065.1 + 30759 0.76 0.783428
Target:  5'- gCCCucggaauCCGA-GGUCGGcgGACGCGGACg -3'
miRNA:   3'- -GGGu------GGCUgCUAGCUuaCUGUGUCUG- -5'
16219 5' -51.1 NC_004065.1 + 67337 0.77 0.774213
Target:  5'- aCCCGCCGG---UCGAAUGGCGCuccGGACg -3'
miRNA:   3'- -GGGUGGCUgcuAGCUUACUGUG---UCUG- -5'
16219 5' -51.1 NC_004065.1 + 147096 0.66 0.999076
Target:  5'- aUUACCGGCGGaggacuccgauuUCGAGUacugacggccGACAUGGACa -3'
miRNA:   3'- gGGUGGCUGCU------------AGCUUA----------CUGUGUCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.