miRNA display CGI


Results 41 - 60 of 161 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16219 5' -51.1 NC_004065.1 + 199112 0.69 0.990121
Target:  5'- uCCCGgCGAUG-UCGAcgGACACGagugcGACc -3'
miRNA:   3'- -GGGUgGCUGCuAGCUuaCUGUGU-----CUG- -5'
16219 5' -51.1 NC_004065.1 + 22842 0.7 0.977756
Target:  5'- gUCACCGACGA-CGGAgu-CugGGACg -3'
miRNA:   3'- gGGUGGCUGCUaGCUUacuGugUCUG- -5'
16219 5' -51.1 NC_004065.1 + 30759 0.76 0.783428
Target:  5'- gCCCucggaauCCGA-GGUCGGcgGACGCGGACg -3'
miRNA:   3'- -GGGu------GGCUgCUAGCUuaCUGUGUCUG- -5'
16219 5' -51.1 NC_004065.1 + 56483 0.69 0.990121
Target:  5'- cCCCGCCGAaGAUaCG-GUGAUGCGGGu -3'
miRNA:   3'- -GGGUGGCUgCUA-GCuUACUGUGUCUg -5'
16219 5' -51.1 NC_004065.1 + 67337 0.77 0.774213
Target:  5'- aCCCGCCGG---UCGAAUGGCGCuccGGACg -3'
miRNA:   3'- -GGGUGGCUgcuAGCUUACUGUG---UCUG- -5'
16219 5' -51.1 NC_004065.1 + 38960 0.67 0.996845
Target:  5'- gCgACCGGCGcggggguucugGUgGAagGUGACGCAGAUg -3'
miRNA:   3'- gGgUGGCUGC-----------UAgCU--UACUGUGUCUG- -5'
16219 5' -51.1 NC_004065.1 + 130168 0.75 0.851633
Target:  5'- cCUCGCacggCGGCGAUCGg--GGCGCAGACg -3'
miRNA:   3'- -GGGUG----GCUGCUAGCuuaCUGUGUCUG- -5'
16219 5' -51.1 NC_004065.1 + 23057 0.67 0.996795
Target:  5'- aCUACCuGACguucagagugaagGAUCGGAgaGACGCGGACc -3'
miRNA:   3'- gGGUGG-CUG-------------CUAGCUUa-CUGUGUCUG- -5'
16219 5' -51.1 NC_004065.1 + 63083 0.67 0.99631
Target:  5'- gUCGCCGGCGAgCGAcgGGCguuGGACc -3'
miRNA:   3'- gGGUGGCUGCUaGCUuaCUGug-UCUG- -5'
16219 5' -51.1 NC_004065.1 + 28626 0.68 0.995013
Target:  5'- aCCCGCCG-CGAcgcaucugugcgUCGAcGUGGCACcccccggcgAGGCg -3'
miRNA:   3'- -GGGUGGCuGCU------------AGCU-UACUGUG---------UCUG- -5'
16219 5' -51.1 NC_004065.1 + 385 0.68 0.994239
Target:  5'- gCCGCCGGCcg--GGAUGGCGCAcgaGACg -3'
miRNA:   3'- gGGUGGCUGcuagCUUACUGUGU---CUG- -5'
16219 5' -51.1 NC_004065.1 + 8122 0.68 0.992399
Target:  5'- cCCCagaGCCgGGCGccGUCGAGgucGACGCAGAa -3'
miRNA:   3'- -GGG---UGG-CUGC--UAGCUUa--CUGUGUCUg -5'
16219 5' -51.1 NC_004065.1 + 133402 0.68 0.992296
Target:  5'- aCCGCCGGCGA-CGAG-GACGaagggguCAGAUc -3'
miRNA:   3'- gGGUGGCUGCUaGCUUaCUGU-------GUCUG- -5'
16219 5' -51.1 NC_004065.1 + 185981 0.69 0.990121
Target:  5'- --uGgCGAUGAUgCGGAUGGCGCGGAUc -3'
miRNA:   3'- gggUgGCUGCUA-GCUUACUGUGUCUG- -5'
16219 5' -51.1 NC_004065.1 + 87041 0.69 0.988797
Target:  5'- aCUGCCGaaagacGCGGUCGuagGACACcAGACa -3'
miRNA:   3'- gGGUGGC------UGCUAGCuuaCUGUG-UCUG- -5'
16219 5' -51.1 NC_004065.1 + 110789 0.7 0.98208
Target:  5'- aCUCGCCGACGAUCuaccUGACGCugcgguacgcgaAGGCc -3'
miRNA:   3'- -GGGUGGCUGCUAGcuu-ACUGUG------------UCUG- -5'
16219 5' -51.1 NC_004065.1 + 32253 0.7 0.979788
Target:  5'- -aCACCGGCGAUCcGAUGAagaccuaCugGGACc -3'
miRNA:   3'- ggGUGGCUGCUAGcUUACU-------GugUCUG- -5'
16219 5' -51.1 NC_004065.1 + 163487 0.71 0.966882
Target:  5'- -aCGCCGcGCGGUUGAA--GCGCAGGCg -3'
miRNA:   3'- ggGUGGC-UGCUAGCUUacUGUGUCUG- -5'
16219 5' -51.1 NC_004065.1 + 153600 0.72 0.952703
Target:  5'- aCgACCGACuGAUCGggUcGGCuCGGGCg -3'
miRNA:   3'- gGgUGGCUG-CUAGCuuA-CUGuGUCUG- -5'
16219 5' -51.1 NC_004065.1 + 22604 0.73 0.913399
Target:  5'- aCCGCCuGGCGAgUCGA---GCACGGACg -3'
miRNA:   3'- gGGUGG-CUGCU-AGCUuacUGUGUCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.