miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1622 3' -51.2 NC_001347.2 + 156227 0.66 0.998542
Target:  5'- gCGCGCCacguagGUGAGuucAAUGUGCUUaaggUGAa -3'
miRNA:   3'- aGCGCGG------CGCUC---UUGCACGAAaa--ACU- -5'
1622 3' -51.2 NC_001347.2 + 174963 0.66 0.998542
Target:  5'- aCGUGCuCGCu-GAACGUGCUg----- -3'
miRNA:   3'- aGCGCG-GCGcuCUUGCACGAaaaacu -5'
1622 3' -51.2 NC_001347.2 + 82822 0.66 0.997921
Target:  5'- cCGCGUCGUGAGcGCGgcgGCUc----- -3'
miRNA:   3'- aGCGCGGCGCUCuUGCa--CGAaaaacu -5'
1622 3' -51.2 NC_001347.2 + 172379 0.66 0.997534
Target:  5'- -gGCgGCCGUGAaccuGAGCGUGUUUgugGAc -3'
miRNA:   3'- agCG-CGGCGCU----CUUGCACGAAaaaCU- -5'
1622 3' -51.2 NC_001347.2 + 2485 0.66 0.99709
Target:  5'- gCGCGCCGCGcuguGGGCGcGCg------ -3'
miRNA:   3'- aGCGCGGCGCu---CUUGCaCGaaaaacu -5'
1622 3' -51.2 NC_001347.2 + 12720 0.66 0.99709
Target:  5'- gUCuCGCCGCGAGAucugGCGguugGCUgacagcgUGGa -3'
miRNA:   3'- -AGcGCGGCGCUCU----UGCa---CGAaaa----ACU- -5'
1622 3' -51.2 NC_001347.2 + 107809 0.66 0.996582
Target:  5'- aUCGCGCUG-GAGGACcUGCUg----- -3'
miRNA:   3'- -AGCGCGGCgCUCUUGcACGAaaaacu -5'
1622 3' -51.2 NC_001347.2 + 199889 0.67 0.996003
Target:  5'- -gGCGCUGCGcGcccGCGUGCUcg-UGAa -3'
miRNA:   3'- agCGCGGCGCuCu--UGCACGAaaaACU- -5'
1622 3' -51.2 NC_001347.2 + 191047 0.67 0.994603
Target:  5'- aUCGUGCCGCG-GAAC-UGCg------ -3'
miRNA:   3'- -AGCGCGGCGCuCUUGcACGaaaaacu -5'
1622 3' -51.2 NC_001347.2 + 153868 0.67 0.994603
Target:  5'- cCGCGCCgaGCGGcGACGUGCa------ -3'
miRNA:   3'- aGCGCGG--CGCUcUUGCACGaaaaacu -5'
1622 3' -51.2 NC_001347.2 + 53743 0.67 0.99283
Target:  5'- gCGUGCCGCGGGuGCGcGCa------ -3'
miRNA:   3'- aGCGCGGCGCUCuUGCaCGaaaaacu -5'
1622 3' -51.2 NC_001347.2 + 198582 0.68 0.991784
Target:  5'- gCGUGCuCGCGuAGAgcGCGUGUcguagUUUUGAc -3'
miRNA:   3'- aGCGCG-GCGC-UCU--UGCACGa----AAAACU- -5'
1622 3' -51.2 NC_001347.2 + 81456 0.68 0.990621
Target:  5'- -gGCGUCGCGA--ACGUGCacggUGAa -3'
miRNA:   3'- agCGCGGCGCUcuUGCACGaaaaACU- -5'
1622 3' -51.2 NC_001347.2 + 88367 0.68 0.989333
Target:  5'- gCGCuGCCGCGAGAcgACGUGg------- -3'
miRNA:   3'- aGCG-CGGCGCUCU--UGCACgaaaaacu -5'
1622 3' -51.2 NC_001347.2 + 194414 0.68 0.98791
Target:  5'- gCGCccgaaGCCGCGcGAGCGUGCgagcgGGg -3'
miRNA:   3'- aGCG-----CGGCGCuCUUGCACGaaaaaCU- -5'
1622 3' -51.2 NC_001347.2 + 141325 0.68 0.98791
Target:  5'- cCGCGCgggcaagggcaaCGCGGGuAGCGUGUUUUUUc- -3'
miRNA:   3'- aGCGCG------------GCGCUC-UUGCACGAAAAAcu -5'
1622 3' -51.2 NC_001347.2 + 2238 0.68 0.986345
Target:  5'- cCGUGCCGCGcgccaugcuGGugGUGCUgcugGAc -3'
miRNA:   3'- aGCGCGGCGCu--------CUugCACGAaaaaCU- -5'
1622 3' -51.2 NC_001347.2 + 97520 0.68 0.986345
Target:  5'- gCGCGCCGcCGAGAuuCGUcGCUgcaccguagUGAu -3'
miRNA:   3'- aGCGCGGC-GCUCUu-GCA-CGAaaa------ACU- -5'
1622 3' -51.2 NC_001347.2 + 147871 0.69 0.984628
Target:  5'- -gGCGCCGCGGGAAag-GCcg-UUGGc -3'
miRNA:   3'- agCGCGGCGCUCUUgcaCGaaaAACU- -5'
1622 3' -51.2 NC_001347.2 + 192727 0.69 0.97609
Target:  5'- cUCGCGCCGUcaacAGCGUGCcUUUUGc -3'
miRNA:   3'- -AGCGCGGCGcuc-UUGCACGaAAAACu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.