miRNA display CGI


Results 1 - 20 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1622 5' -47.6 NC_001347.2 + 208037 0.66 0.999969
Target:  5'- ----uGGGACCGaCGUCGgagucgcggcguucGUUGGCGCc -3'
miRNA:   3'- auauuUUUUGGC-GCAGUa-------------CGACCGCG- -5'
1622 5' -47.6 NC_001347.2 + 136450 0.66 0.999965
Target:  5'- aGUGGAAuuuuACCgGCG-CAUGCgcagGGCGa -3'
miRNA:   3'- aUAUUUUu---UGG-CGCaGUACGa---CCGCg -5'
1622 5' -47.6 NC_001347.2 + 210886 0.66 0.999965
Target:  5'- -------cGCCGCGcCA-GCUGGCa- -3'
miRNA:   3'- auauuuuuUGGCGCaGUaCGACCGcg -5'
1622 5' -47.6 NC_001347.2 + 163946 0.66 0.999965
Target:  5'- aUGUGAuuGugcACgCGCGUCAgcaGCUGcGUGCu -3'
miRNA:   3'- -AUAUUuuU---UG-GCGCAGUa--CGAC-CGCG- -5'
1622 5' -47.6 NC_001347.2 + 15003 0.66 0.999965
Target:  5'- gGUGGAGAGCCGuCGUUGgugguggGCUGuccGUGCu -3'
miRNA:   3'- aUAUUUUUUGGC-GCAGUa------CGAC---CGCG- -5'
1622 5' -47.6 NC_001347.2 + 25405 0.66 0.999965
Target:  5'- ------uGACCGCGU--UGUUGaGCGCc -3'
miRNA:   3'- auauuuuUUGGCGCAguACGAC-CGCG- -5'
1622 5' -47.6 NC_001347.2 + 182507 0.66 0.99996
Target:  5'- --gAAGAAGCCGCGUCGgucacaggacGGCGa -3'
miRNA:   3'- auaUUUUUUGGCGCAGUacga------CCGCg -5'
1622 5' -47.6 NC_001347.2 + 5105 0.66 0.99996
Target:  5'- cAUGAuAAACCGCGUCAaucccaacgagucaUGCacccgcacgcguuUGGCauGCg -3'
miRNA:   3'- aUAUUuUUUGGCGCAGU--------------ACG-------------ACCG--CG- -5'
1622 5' -47.6 NC_001347.2 + 193893 0.66 0.999953
Target:  5'- -----cGAGCC-CGUCAUGCcgcugGGCGa -3'
miRNA:   3'- auauuuUUUGGcGCAGUACGa----CCGCg -5'
1622 5' -47.6 NC_001347.2 + 162118 0.66 0.999953
Target:  5'- -----cGGGCCGCGUCGgccUGCUGaucuagcaGCGUu -3'
miRNA:   3'- auauuuUUUGGCGCAGU---ACGAC--------CGCG- -5'
1622 5' -47.6 NC_001347.2 + 191588 0.66 0.999953
Target:  5'- cGUucGAGGCCGUGUUGuacUGCUcGGUGUg -3'
miRNA:   3'- aUAuuUUUUGGCGCAGU---ACGA-CCGCG- -5'
1622 5' -47.6 NC_001347.2 + 68461 0.66 0.999937
Target:  5'- cAUGAAGcccuGCUGCGUC---UUGGCGCc -3'
miRNA:   3'- aUAUUUUu---UGGCGCAGuacGACCGCG- -5'
1622 5' -47.6 NC_001347.2 + 124985 0.66 0.999937
Target:  5'- gGUGAGAc-CCGCGUCc--CUGGgGCu -3'
miRNA:   3'- aUAUUUUuuGGCGCAGuacGACCgCG- -5'
1622 5' -47.6 NC_001347.2 + 180761 0.66 0.999937
Target:  5'- ------cGACUGCGUCuacgaGCUGGCa- -3'
miRNA:   3'- auauuuuUUGGCGCAGua---CGACCGcg -5'
1622 5' -47.6 NC_001347.2 + 183140 0.66 0.999917
Target:  5'- --cGAAAGucuGCCGCGUCucggggGCUuGCGUg -3'
miRNA:   3'- auaUUUUU---UGGCGCAGua----CGAcCGCG- -5'
1622 5' -47.6 NC_001347.2 + 17101 0.66 0.999917
Target:  5'- --gGAAAcgacGGCCGCGcCAUGCcGGuCGUc -3'
miRNA:   3'- auaUUUU----UUGGCGCaGUACGaCC-GCG- -5'
1622 5' -47.6 NC_001347.2 + 112640 0.66 0.999917
Target:  5'- gGUAAuAGGCCG-GUgAUGgUGGCGg -3'
miRNA:   3'- aUAUUuUUUGGCgCAgUACgACCGCg -5'
1622 5' -47.6 NC_001347.2 + 203748 0.66 0.999917
Target:  5'- aGUucAAAGUC-CGUCAUGCUGGCauGCa -3'
miRNA:   3'- aUAuuUUUUGGcGCAGUACGACCG--CG- -5'
1622 5' -47.6 NC_001347.2 + 39156 0.66 0.999915
Target:  5'- --------cCCGCGUCGcgcUGCgaccacuugcgcaUGGCGCg -3'
miRNA:   3'- auauuuuuuGGCGCAGU---ACG-------------ACCGCG- -5'
1622 5' -47.6 NC_001347.2 + 196844 0.67 0.999891
Target:  5'- cGUGGAGAccuuCUGCGacuuucUCGaGCUGGUGCa -3'
miRNA:   3'- aUAUUUUUu---GGCGC------AGUaCGACCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.