miRNA display CGI


Results 1 - 20 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1622 5' -47.6 NC_001347.2 + 142124 1.11 0.017989
Target:  5'- uUAUAAAAAACCGCGUCAUGCUGGCGCu -3'
miRNA:   3'- -AUAUUUUUUGGCGCAGUACGACCGCG- -5'
1622 5' -47.6 NC_001347.2 + 76134 0.79 0.806557
Target:  5'- --gAAAAAGCCGCGUCAUcucgGC-GGCGUa -3'
miRNA:   3'- auaUUUUUUGGCGCAGUA----CGaCCGCG- -5'
1622 5' -47.6 NC_001347.2 + 168481 0.78 0.833449
Target:  5'- -------cGCCGcCGUCGUGCUGGUGUc -3'
miRNA:   3'- auauuuuuUGGC-GCAGUACGACCGCG- -5'
1622 5' -47.6 NC_001347.2 + 156443 0.78 0.858545
Target:  5'- --aAGAAAGCCGCGUCGacgucGUUGGCGg -3'
miRNA:   3'- auaUUUUUUGGCGCAGUa----CGACCGCg -5'
1622 5' -47.6 NC_001347.2 + 60984 0.77 0.888854
Target:  5'- aUGUGAAuAGCaGCGUCAccUGCUGGgGCu -3'
miRNA:   3'- -AUAUUUuUUGgCGCAGU--ACGACCgCG- -5'
1622 5' -47.6 NC_001347.2 + 208118 0.76 0.902549
Target:  5'- ----cGGAGCCGCGUCGcucGCcGGCGCu -3'
miRNA:   3'- auauuUUUUGGCGCAGUa--CGaCCGCG- -5'
1622 5' -47.6 NC_001347.2 + 141803 0.75 0.937466
Target:  5'- ---uGAAGACCGCaggCGUGCcGGCGCc -3'
miRNA:   3'- auauUUUUUGGCGca-GUACGaCCGCG- -5'
1622 5' -47.6 NC_001347.2 + 200600 0.75 0.937466
Target:  5'- cAUGGAGuuuGCgCGCGUCggGCUGcGCGCc -3'
miRNA:   3'- aUAUUUUu--UG-GCGCAGuaCGAC-CGCG- -5'
1622 5' -47.6 NC_001347.2 + 39690 0.74 0.959468
Target:  5'- -------cACgGCG-CGUGCUGGCGCc -3'
miRNA:   3'- auauuuuuUGgCGCaGUACGACCGCG- -5'
1622 5' -47.6 NC_001347.2 + 174793 0.74 0.963124
Target:  5'- -----uGggUCGCGaguUCAUGUUGGCGCg -3'
miRNA:   3'- auauuuUuuGGCGC---AGUACGACCGCG- -5'
1622 5' -47.6 NC_001347.2 + 16262 0.74 0.963124
Target:  5'- -------uGCgCGCGUCAUcuggacgaGCUGGCGCg -3'
miRNA:   3'- auauuuuuUG-GCGCAGUA--------CGACCGCG- -5'
1622 5' -47.6 NC_001347.2 + 98005 0.74 0.966544
Target:  5'- -------cGCCGCGUCGUGCcaacccGGCGUc -3'
miRNA:   3'- auauuuuuUGGCGCAGUACGa-----CCGCG- -5'
1622 5' -47.6 NC_001347.2 + 48828 0.73 0.969734
Target:  5'- cUAUAAAGAAaccaCGCGUCAggGC-GGUGCg -3'
miRNA:   3'- -AUAUUUUUUg---GCGCAGUa-CGaCCGCG- -5'
1622 5' -47.6 NC_001347.2 + 96655 0.73 0.969734
Target:  5'- -------cACCGCGUCAcGCUGGC-Cg -3'
miRNA:   3'- auauuuuuUGGCGCAGUaCGACCGcG- -5'
1622 5' -47.6 NC_001347.2 + 190834 0.73 0.972701
Target:  5'- --gAAAAAGCgCGCGgCAUGUUGcGCGCc -3'
miRNA:   3'- auaUUUUUUG-GCGCaGUACGAC-CGCG- -5'
1622 5' -47.6 NC_001347.2 + 82818 0.73 0.972701
Target:  5'- -----cAAACCGCGUCGUGa--GCGCg -3'
miRNA:   3'- auauuuUUUGGCGCAGUACgacCGCG- -5'
1622 5' -47.6 NC_001347.2 + 37057 0.73 0.977994
Target:  5'- ------cGGCCGCGgagGUGCUGGCGg -3'
miRNA:   3'- auauuuuUUGGCGCag-UACGACCGCg -5'
1622 5' -47.6 NC_001347.2 + 85547 0.73 0.977994
Target:  5'- -cUGAAGAgcGCCGCGUCGUGCgaaaGCa -3'
miRNA:   3'- auAUUUUU--UGGCGCAGUACGaccgCG- -5'
1622 5' -47.6 NC_001347.2 + 142333 0.73 0.980336
Target:  5'- -cUGGAGAACuUGCGacgCGUGCUGGaCGCc -3'
miRNA:   3'- auAUUUUUUG-GCGCa--GUACGACC-GCG- -5'
1622 5' -47.6 NC_001347.2 + 82514 0.72 0.982488
Target:  5'- ----cGAGGCCaGCGcagCGUaGCUGGCGCg -3'
miRNA:   3'- auauuUUUUGG-CGCa--GUA-CGACCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.