miRNA display CGI


Results 21 - 40 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1622 5' -47.6 NC_001347.2 + 136338 0.72 0.984457
Target:  5'- aGUGGAAAaauACCgGCG-CAUGCgcacGGCGCa -3'
miRNA:   3'- aUAUUUUU---UGG-CGCaGUACGa---CCGCG- -5'
1622 5' -47.6 NC_001347.2 + 194046 0.72 0.986254
Target:  5'- ------cGugCGCGUgGgGCUGGCGCu -3'
miRNA:   3'- auauuuuUugGCGCAgUaCGACCGCG- -5'
1622 5' -47.6 NC_001347.2 + 192187 0.72 0.987886
Target:  5'- gAUGAGcgGCCGCGgcgCggGCUcGGCGUc -3'
miRNA:   3'- aUAUUUuuUGGCGCa--GuaCGA-CCGCG- -5'
1622 5' -47.6 NC_001347.2 + 1888 0.71 0.991194
Target:  5'- -----uGAACCaGCGUCugugcugcggcugGCUGGCGCu -3'
miRNA:   3'- auauuuUUUGG-CGCAGua-----------CGACCGCG- -5'
1622 5' -47.6 NC_001347.2 + 73170 0.71 0.991897
Target:  5'- -----cGAGCCGauccgcaaaCGUCGUGCgaGGCGCg -3'
miRNA:   3'- auauuuUUUGGC---------GCAGUACGa-CCGCG- -5'
1622 5' -47.6 NC_001347.2 + 125834 0.71 0.993926
Target:  5'- ------cAGCUGCaUCGUGCcGGCGCg -3'
miRNA:   3'- auauuuuUUGGCGcAGUACGaCCGCG- -5'
1622 5' -47.6 NC_001347.2 + 41358 0.71 0.993926
Target:  5'- ---cGAGGACgGCGUCucUGuCUGGCGUc -3'
miRNA:   3'- auauUUUUUGgCGCAGu-AC-GACCGCG- -5'
1622 5' -47.6 NC_001347.2 + 137453 0.7 0.995525
Target:  5'- cUGUAuucuACCGCGcgCGUGCgUGcGCGCg -3'
miRNA:   3'- -AUAUuuuuUGGCGCa-GUACG-AC-CGCG- -5'
1622 5' -47.6 NC_001347.2 + 171803 0.7 0.995525
Target:  5'- --gGAAAAACUGCGUCcgcUGCacaucGGCGUg -3'
miRNA:   3'- auaUUUUUUGGCGCAGu--ACGa----CCGCG- -5'
1622 5' -47.6 NC_001347.2 + 2241 0.7 0.996185
Target:  5'- -------uGCCGCGcgcCAUGCUGGUGg -3'
miRNA:   3'- auauuuuuUGGCGCa--GUACGACCGCg -5'
1622 5' -47.6 NC_001347.2 + 164077 0.7 0.996763
Target:  5'- --cAGAAuuUCGCGUCGguucagaucGCUGGCGUc -3'
miRNA:   3'- auaUUUUuuGGCGCAGUa--------CGACCGCG- -5'
1622 5' -47.6 NC_001347.2 + 201472 0.7 0.996763
Target:  5'- ---cAAAGACCGCugccUCGUuauccggcgucGCUGGCGCu -3'
miRNA:   3'- auauUUUUUGGCGc---AGUA-----------CGACCGCG- -5'
1622 5' -47.6 NC_001347.2 + 167849 0.7 0.996973
Target:  5'- gGUGGAGAugCGCGUgcuaaugaugggaaaCAUgaggccGCUGGCGUc -3'
miRNA:   3'- aUAUUUUUugGCGCA---------------GUA------CGACCGCG- -5'
1622 5' -47.6 NC_001347.2 + 129490 0.69 0.997703
Target:  5'- --aAAAAGAgCGCGUC-UGCagcgcGGCGCc -3'
miRNA:   3'- auaUUUUUUgGCGCAGuACGa----CCGCG- -5'
1622 5' -47.6 NC_001347.2 + 20453 0.69 0.997703
Target:  5'- ----cGAGACCGuCGccacCAUGCaGGCGCa -3'
miRNA:   3'- auauuUUUUGGC-GCa---GUACGaCCGCG- -5'
1622 5' -47.6 NC_001347.2 + 142251 0.69 0.997703
Target:  5'- cGUGGAugGCUGCGagGcGCUGGcCGCg -3'
miRNA:   3'- aUAUUUuuUGGCGCagUaCGACC-GCG- -5'
1622 5' -47.6 NC_001347.2 + 149321 0.69 0.997703
Target:  5'- --cGGAucACCaCGUUcgGCUGGUGCu -3'
miRNA:   3'- auaUUUuuUGGcGCAGuaCGACCGCG- -5'
1622 5' -47.6 NC_001347.2 + 127425 0.69 0.99808
Target:  5'- ------cGACgGCGUCuccgGuCUGGCGCg -3'
miRNA:   3'- auauuuuUUGgCGCAGua--C-GACCGCG- -5'
1622 5' -47.6 NC_001347.2 + 57770 0.69 0.99808
Target:  5'- --gAGGAGACUaGUGUgAUGCUGGCcaaGCg -3'
miRNA:   3'- auaUUUUUUGG-CGCAgUACGACCG---CG- -5'
1622 5' -47.6 NC_001347.2 + 170063 0.69 0.99808
Target:  5'- aGUGGu-GGCgGCGUCGUcaGUUGGCGUc -3'
miRNA:   3'- aUAUUuuUUGgCGCAGUA--CGACCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.