miRNA display CGI


Results 21 - 40 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1622 5' -47.6 NC_001347.2 + 208076 0.67 0.999891
Target:  5'- -------uGCCGCGUCGgguaccgcUGCcgcagaugGGCGCa -3'
miRNA:   3'- auauuuuuUGGCGCAGU--------ACGa-------CCGCG- -5'
1622 5' -47.6 NC_001347.2 + 210181 0.67 0.999891
Target:  5'- --------cUCGCGUCGUGCcugacGGUGCu -3'
miRNA:   3'- auauuuuuuGGCGCAGUACGa----CCGCG- -5'
1622 5' -47.6 NC_001347.2 + 196844 0.67 0.999891
Target:  5'- cGUGGAGAccuuCUGCGacuuucUCGaGCUGGUGCa -3'
miRNA:   3'- aUAUUUUUu---GGCGC------AGUaCGACCGCG- -5'
1622 5' -47.6 NC_001347.2 + 159261 0.67 0.999891
Target:  5'- cGUGAuAGGCgGCGaggcgaaacUgGUGCUGGCGg -3'
miRNA:   3'- aUAUUuUUUGgCGC---------AgUACGACCGCg -5'
1622 5' -47.6 NC_001347.2 + 192643 0.67 0.999859
Target:  5'- cGUGGAGAcGCUGCGUCGguuucUGCgcGGCGa -3'
miRNA:   3'- aUAUUUUU-UGGCGCAGU-----ACGa-CCGCg -5'
1622 5' -47.6 NC_001347.2 + 191250 0.67 0.999859
Target:  5'- cGUGAAAGGCacgGCGUaAUGCgggcaGGCGUg -3'
miRNA:   3'- aUAUUUUUUGg--CGCAgUACGa----CCGCG- -5'
1622 5' -47.6 NC_001347.2 + 192232 0.67 0.999859
Target:  5'- gUGUAuauAAACCGCGUCGgccucgccgGCccGaGCGCg -3'
miRNA:   3'- -AUAUuu-UUUGGCGCAGUa--------CGa-C-CGCG- -5'
1622 5' -47.6 NC_001347.2 + 187755 0.67 0.999818
Target:  5'- --gGAGGAGCUggaGCGcaaAUGuCUGGCGCg -3'
miRNA:   3'- auaUUUUUUGG---CGCag-UAC-GACCGCG- -5'
1622 5' -47.6 NC_001347.2 + 139658 0.67 0.999818
Target:  5'- ----cGGAGCCGCGU-GUGCUgaucgaggcGGCGUu -3'
miRNA:   3'- auauuUUUUGGCGCAgUACGA---------CCGCG- -5'
1622 5' -47.6 NC_001347.2 + 228217 0.67 0.999818
Target:  5'- -------cACCGCGUUGUGCccaGCGCc -3'
miRNA:   3'- auauuuuuUGGCGCAGUACGac-CGCG- -5'
1622 5' -47.6 NC_001347.2 + 111260 0.67 0.999818
Target:  5'- ----cGGAGCaaCGUCAUGCgcGGCGCc -3'
miRNA:   3'- auauuUUUUGgcGCAGUACGa-CCGCG- -5'
1622 5' -47.6 NC_001347.2 + 33740 0.67 0.999767
Target:  5'- uUAUGAAuAACUGCGUC-UGUgacGGgGCc -3'
miRNA:   3'- -AUAUUUuUUGGCGCAGuACGa--CCgCG- -5'
1622 5' -47.6 NC_001347.2 + 47233 0.67 0.999767
Target:  5'- uUAUGGAAcACuCGCGUCcgGUUGG-GUa -3'
miRNA:   3'- -AUAUUUUuUG-GCGCAGuaCGACCgCG- -5'
1622 5' -47.6 NC_001347.2 + 12248 0.67 0.999767
Target:  5'- gGUGucuAGACCGCGaUCGcggggUGCuuuacuaccUGGCGCa -3'
miRNA:   3'- aUAUuu-UUUGGCGC-AGU-----ACG---------ACCGCG- -5'
1622 5' -47.6 NC_001347.2 + 221006 0.67 0.999767
Target:  5'- cGUGAGAuuguACaGCGUCAgauuUUGGCGCg -3'
miRNA:   3'- aUAUUUUu---UGgCGCAGUac--GACCGCG- -5'
1622 5' -47.6 NC_001347.2 + 194710 0.67 0.999704
Target:  5'- ---cGAGGACaagGUGUaCGUGCUGGgGCu -3'
miRNA:   3'- auauUUUUUGg--CGCA-GUACGACCgCG- -5'
1622 5' -47.6 NC_001347.2 + 152363 0.67 0.999704
Target:  5'- gGUGAGAGuaguggugggGCUGCGUCGccUGCgacGGCGg -3'
miRNA:   3'- aUAUUUUU----------UGGCGCAGU--ACGa--CCGCg -5'
1622 5' -47.6 NC_001347.2 + 95469 0.68 0.999627
Target:  5'- -----uGGGCgCGCGUCAcGC-GGCGCc -3'
miRNA:   3'- auauuuUUUG-GCGCAGUaCGaCCGCG- -5'
1622 5' -47.6 NC_001347.2 + 229046 0.68 0.999627
Target:  5'- ----uGAAGCgGCGUgGUGUgGGUGCu -3'
miRNA:   3'- auauuUUUUGgCGCAgUACGaCCGCG- -5'
1622 5' -47.6 NC_001347.2 + 18429 0.68 0.999627
Target:  5'- ----uGGAGCCGUugcUCAUGCUGG-GCu -3'
miRNA:   3'- auauuUUUUGGCGc--AGUACGACCgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.