miRNA display CGI


Results 41 - 60 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1622 5' -47.6 NC_001347.2 + 62330 0.68 0.999532
Target:  5'- uUGUAcguGACCua--CAUGCUGGCGCg -3'
miRNA:   3'- -AUAUuuuUUGGcgcaGUACGACCGCG- -5'
1622 5' -47.6 NC_001347.2 + 206844 0.68 0.999417
Target:  5'- gUGUGAAGAGCgCGUGaucCAUGCUcguggcaacGGCGUg -3'
miRNA:   3'- -AUAUUUUUUG-GCGCa--GUACGA---------CCGCG- -5'
1622 5' -47.6 NC_001347.2 + 148816 0.68 0.999417
Target:  5'- cAUGGuuuGGCCGUGUCc--UUGGCGCg -3'
miRNA:   3'- aUAUUuu-UUGGCGCAGuacGACCGCG- -5'
1622 5' -47.6 NC_001347.2 + 29936 0.68 0.999278
Target:  5'- cGUGGAGGcACCGCGaCA-GCUaccgaGGCGCu -3'
miRNA:   3'- aUAUUUUU-UGGCGCaGUaCGA-----CCGCG- -5'
1622 5' -47.6 NC_001347.2 + 109463 0.68 0.999278
Target:  5'- --------cCCGCGUCAccgGCggcGGCGCc -3'
miRNA:   3'- auauuuuuuGGCGCAGUa--CGa--CCGCG- -5'
1622 5' -47.6 NC_001347.2 + 193261 0.68 0.999278
Target:  5'- cUAUGAGGGccuGCgGCGUUAcuUGC-GGCGCu -3'
miRNA:   3'- -AUAUUUUU---UGgCGCAGU--ACGaCCGCG- -5'
1622 5' -47.6 NC_001347.2 + 85660 0.68 0.999112
Target:  5'- -------cGCCGCGUCGUGCcucCGCa -3'
miRNA:   3'- auauuuuuUGGCGCAGUACGaccGCG- -5'
1622 5' -47.6 NC_001347.2 + 152834 0.68 0.999112
Target:  5'- cAUAAAGGGCaCGaUGUCGUGgUUGGCGg -3'
miRNA:   3'- aUAUUUUUUG-GC-GCAGUAC-GACCGCg -5'
1622 5' -47.6 NC_001347.2 + 219051 0.68 0.999112
Target:  5'- ---uAGAAACgGUGgu-UGCUGGUGCa -3'
miRNA:   3'- auauUUUUUGgCGCaguACGACCGCG- -5'
1622 5' -47.6 NC_001347.2 + 178294 0.68 0.999056
Target:  5'- --gAGGAAGCuucggugcggcccaCGCGUCA-GCUGGUGUu -3'
miRNA:   3'- auaUUUUUUG--------------GCGCAGUaCGACCGCG- -5'
1622 5' -47.6 NC_001347.2 + 158988 0.69 0.998914
Target:  5'- cAUGGu-AGCCGUGUCGcGCacccGGCGCu -3'
miRNA:   3'- aUAUUuuUUGGCGCAGUaCGa---CCGCG- -5'
1622 5' -47.6 NC_001347.2 + 194875 0.69 0.998914
Target:  5'- ------cGACCGCGcCAaucUGCUGcGCGUa -3'
miRNA:   3'- auauuuuUUGGCGCaGU---ACGAC-CGCG- -5'
1622 5' -47.6 NC_001347.2 + 140681 0.69 0.998914
Target:  5'- gAUGGGGcGCgGCGgucgCAUGUUgGGCGCu -3'
miRNA:   3'- aUAUUUUuUGgCGCa---GUACGA-CCGCG- -5'
1622 5' -47.6 NC_001347.2 + 1234 0.69 0.99868
Target:  5'- -----cGGGCCGCGcCAUGCgcaagUGGuCGCa -3'
miRNA:   3'- auauuuUUUGGCGCaGUACG-----ACC-GCG- -5'
1622 5' -47.6 NC_001347.2 + 172694 0.69 0.99868
Target:  5'- ----cGGAGCCGCcgac-GCUGGCGCu -3'
miRNA:   3'- auauuUUUUGGCGcaguaCGACCGCG- -5'
1622 5' -47.6 NC_001347.2 + 2349 0.69 0.99868
Target:  5'- -------uGCgCGCGggCGUGCUgGGCGCg -3'
miRNA:   3'- auauuuuuUG-GCGCa-GUACGA-CCGCG- -5'
1622 5' -47.6 NC_001347.2 + 129391 0.69 0.998403
Target:  5'- -----cGGACCGCaaCAacaacagaUGCUGGCGCu -3'
miRNA:   3'- auauuuUUUGGCGcaGU--------ACGACCGCG- -5'
1622 5' -47.6 NC_001347.2 + 24335 0.69 0.998403
Target:  5'- gAUGAAGcGGCCGUGguggcCGUGCUGG-GCu -3'
miRNA:   3'- aUAUUUU-UUGGCGCa----GUACGACCgCG- -5'
1622 5' -47.6 NC_001347.2 + 103719 0.69 0.998403
Target:  5'- -------uGCUGCGUCGUGaC-GGCGCc -3'
miRNA:   3'- auauuuuuUGGCGCAGUAC-GaCCGCG- -5'
1622 5' -47.6 NC_001347.2 + 57770 0.69 0.99808
Target:  5'- --gAGGAGACUaGUGUgAUGCUGGCcaaGCg -3'
miRNA:   3'- auaUUUUUUGG-CGCAgUACGACCG---CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.