miRNA display CGI


Results 1 - 20 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1622 5' -47.6 NC_001347.2 + 1234 0.69 0.99868
Target:  5'- -----cGGGCCGCGcCAUGCgcaagUGGuCGCa -3'
miRNA:   3'- auauuuUUUGGCGCaGUACG-----ACC-GCG- -5'
1622 5' -47.6 NC_001347.2 + 1888 0.71 0.991194
Target:  5'- -----uGAACCaGCGUCugugcugcggcugGCUGGCGCu -3'
miRNA:   3'- auauuuUUUGG-CGCAGua-----------CGACCGCG- -5'
1622 5' -47.6 NC_001347.2 + 2241 0.7 0.996185
Target:  5'- -------uGCCGCGcgcCAUGCUGGUGg -3'
miRNA:   3'- auauuuuuUGGCGCa--GUACGACCGCg -5'
1622 5' -47.6 NC_001347.2 + 2349 0.69 0.99868
Target:  5'- -------uGCgCGCGggCGUGCUgGGCGCg -3'
miRNA:   3'- auauuuuuUG-GCGCa-GUACGA-CCGCG- -5'
1622 5' -47.6 NC_001347.2 + 5105 0.66 0.99996
Target:  5'- cAUGAuAAACCGCGUCAaucccaacgagucaUGCacccgcacgcguuUGGCauGCg -3'
miRNA:   3'- aUAUUuUUUGGCGCAGU--------------ACG-------------ACCG--CG- -5'
1622 5' -47.6 NC_001347.2 + 12248 0.67 0.999767
Target:  5'- gGUGucuAGACCGCGaUCGcggggUGCuuuacuaccUGGCGCa -3'
miRNA:   3'- aUAUuu-UUUGGCGC-AGU-----ACG---------ACCGCG- -5'
1622 5' -47.6 NC_001347.2 + 15003 0.66 0.999965
Target:  5'- gGUGGAGAGCCGuCGUUGgugguggGCUGuccGUGCu -3'
miRNA:   3'- aUAUUUUUUGGC-GCAGUa------CGAC---CGCG- -5'
1622 5' -47.6 NC_001347.2 + 16262 0.74 0.963124
Target:  5'- -------uGCgCGCGUCAUcuggacgaGCUGGCGCg -3'
miRNA:   3'- auauuuuuUG-GCGCAGUA--------CGACCGCG- -5'
1622 5' -47.6 NC_001347.2 + 17101 0.66 0.999917
Target:  5'- --gGAAAcgacGGCCGCGcCAUGCcGGuCGUc -3'
miRNA:   3'- auaUUUU----UUGGCGCaGUACGaCC-GCG- -5'
1622 5' -47.6 NC_001347.2 + 18429 0.68 0.999627
Target:  5'- ----uGGAGCCGUugcUCAUGCUGG-GCu -3'
miRNA:   3'- auauuUUUUGGCGc--AGUACGACCgCG- -5'
1622 5' -47.6 NC_001347.2 + 20453 0.69 0.997703
Target:  5'- ----cGAGACCGuCGccacCAUGCaGGCGCa -3'
miRNA:   3'- auauuUUUUGGC-GCa---GUACGaCCGCG- -5'
1622 5' -47.6 NC_001347.2 + 24335 0.69 0.998403
Target:  5'- gAUGAAGcGGCCGUGguggcCGUGCUGG-GCu -3'
miRNA:   3'- aUAUUUU-UUGGCGCa----GUACGACCgCG- -5'
1622 5' -47.6 NC_001347.2 + 25405 0.66 0.999965
Target:  5'- ------uGACCGCGU--UGUUGaGCGCc -3'
miRNA:   3'- auauuuuUUGGCGCAguACGAC-CGCG- -5'
1622 5' -47.6 NC_001347.2 + 29936 0.68 0.999278
Target:  5'- cGUGGAGGcACCGCGaCA-GCUaccgaGGCGCu -3'
miRNA:   3'- aUAUUUUU-UGGCGCaGUaCGA-----CCGCG- -5'
1622 5' -47.6 NC_001347.2 + 33740 0.67 0.999767
Target:  5'- uUAUGAAuAACUGCGUC-UGUgacGGgGCc -3'
miRNA:   3'- -AUAUUUuUUGGCGCAGuACGa--CCgCG- -5'
1622 5' -47.6 NC_001347.2 + 37057 0.73 0.977994
Target:  5'- ------cGGCCGCGgagGUGCUGGCGg -3'
miRNA:   3'- auauuuuUUGGCGCag-UACGACCGCg -5'
1622 5' -47.6 NC_001347.2 + 39156 0.66 0.999915
Target:  5'- --------cCCGCGUCGcgcUGCgaccacuugcgcaUGGCGCg -3'
miRNA:   3'- auauuuuuuGGCGCAGU---ACG-------------ACCGCG- -5'
1622 5' -47.6 NC_001347.2 + 39690 0.74 0.959468
Target:  5'- -------cACgGCG-CGUGCUGGCGCc -3'
miRNA:   3'- auauuuuuUGgCGCaGUACGACCGCG- -5'
1622 5' -47.6 NC_001347.2 + 41252 0.67 0.999891
Target:  5'- -----uGGGCCGCcaaccugucGUCAccuuacUGUUGGCGCg -3'
miRNA:   3'- auauuuUUUGGCG---------CAGU------ACGACCGCG- -5'
1622 5' -47.6 NC_001347.2 + 41358 0.71 0.993926
Target:  5'- ---cGAGGACgGCGUCucUGuCUGGCGUc -3'
miRNA:   3'- auauUUUUUGgCGCAGu-AC-GACCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.