miRNA display CGI


Results 21 - 40 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1622 5' -47.6 NC_001347.2 + 47233 0.67 0.999767
Target:  5'- uUAUGGAAcACuCGCGUCcgGUUGG-GUa -3'
miRNA:   3'- -AUAUUUUuUG-GCGCAGuaCGACCgCG- -5'
1622 5' -47.6 NC_001347.2 + 48828 0.73 0.969734
Target:  5'- cUAUAAAGAAaccaCGCGUCAggGC-GGUGCg -3'
miRNA:   3'- -AUAUUUUUUg---GCGCAGUa-CGaCCGCG- -5'
1622 5' -47.6 NC_001347.2 + 57770 0.69 0.99808
Target:  5'- --gAGGAGACUaGUGUgAUGCUGGCcaaGCg -3'
miRNA:   3'- auaUUUUUUGG-CGCAgUACGACCG---CG- -5'
1622 5' -47.6 NC_001347.2 + 60984 0.77 0.888854
Target:  5'- aUGUGAAuAGCaGCGUCAccUGCUGGgGCu -3'
miRNA:   3'- -AUAUUUuUUGgCGCAGU--ACGACCgCG- -5'
1622 5' -47.6 NC_001347.2 + 62330 0.68 0.999532
Target:  5'- uUGUAcguGACCua--CAUGCUGGCGCg -3'
miRNA:   3'- -AUAUuuuUUGGcgcaGUACGACCGCG- -5'
1622 5' -47.6 NC_001347.2 + 68461 0.66 0.999937
Target:  5'- cAUGAAGcccuGCUGCGUC---UUGGCGCc -3'
miRNA:   3'- aUAUUUUu---UGGCGCAGuacGACCGCG- -5'
1622 5' -47.6 NC_001347.2 + 73170 0.71 0.991897
Target:  5'- -----cGAGCCGauccgcaaaCGUCGUGCgaGGCGCg -3'
miRNA:   3'- auauuuUUUGGC---------GCAGUACGa-CCGCG- -5'
1622 5' -47.6 NC_001347.2 + 76134 0.79 0.806557
Target:  5'- --gAAAAAGCCGCGUCAUcucgGC-GGCGUa -3'
miRNA:   3'- auaUUUUUUGGCGCAGUA----CGaCCGCG- -5'
1622 5' -47.6 NC_001347.2 + 82514 0.72 0.982488
Target:  5'- ----cGAGGCCaGCGcagCGUaGCUGGCGCg -3'
miRNA:   3'- auauuUUUUGG-CGCa--GUA-CGACCGCG- -5'
1622 5' -47.6 NC_001347.2 + 82818 0.73 0.972701
Target:  5'- -----cAAACCGCGUCGUGa--GCGCg -3'
miRNA:   3'- auauuuUUUGGCGCAGUACgacCGCG- -5'
1622 5' -47.6 NC_001347.2 + 85547 0.73 0.977994
Target:  5'- -cUGAAGAgcGCCGCGUCGUGCgaaaGCa -3'
miRNA:   3'- auAUUUUU--UGGCGCAGUACGaccgCG- -5'
1622 5' -47.6 NC_001347.2 + 85660 0.68 0.999112
Target:  5'- -------cGCCGCGUCGUGCcucCGCa -3'
miRNA:   3'- auauuuuuUGGCGCAGUACGaccGCG- -5'
1622 5' -47.6 NC_001347.2 + 95469 0.68 0.999627
Target:  5'- -----uGGGCgCGCGUCAcGC-GGCGCc -3'
miRNA:   3'- auauuuUUUG-GCGCAGUaCGaCCGCG- -5'
1622 5' -47.6 NC_001347.2 + 96655 0.73 0.969734
Target:  5'- -------cACCGCGUCAcGCUGGC-Cg -3'
miRNA:   3'- auauuuuuUGGCGCAGUaCGACCGcG- -5'
1622 5' -47.6 NC_001347.2 + 98005 0.74 0.966544
Target:  5'- -------cGCCGCGUCGUGCcaacccGGCGUc -3'
miRNA:   3'- auauuuuuUGGCGCAGUACGa-----CCGCG- -5'
1622 5' -47.6 NC_001347.2 + 103719 0.69 0.998403
Target:  5'- -------uGCUGCGUCGUGaC-GGCGCc -3'
miRNA:   3'- auauuuuuUGGCGCAGUAC-GaCCGCG- -5'
1622 5' -47.6 NC_001347.2 + 109463 0.68 0.999278
Target:  5'- --------cCCGCGUCAccgGCggcGGCGCc -3'
miRNA:   3'- auauuuuuuGGCGCAGUa--CGa--CCGCG- -5'
1622 5' -47.6 NC_001347.2 + 111260 0.67 0.999818
Target:  5'- ----cGGAGCaaCGUCAUGCgcGGCGCc -3'
miRNA:   3'- auauuUUUUGgcGCAGUACGa-CCGCG- -5'
1622 5' -47.6 NC_001347.2 + 112640 0.66 0.999917
Target:  5'- gGUAAuAGGCCG-GUgAUGgUGGCGg -3'
miRNA:   3'- aUAUUuUUUGGCgCAgUACgACCGCg -5'
1622 5' -47.6 NC_001347.2 + 124985 0.66 0.999937
Target:  5'- gGUGAGAc-CCGCGUCc--CUGGgGCu -3'
miRNA:   3'- aUAUUUUuuGGCGCAGuacGACCgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.