miRNA display CGI


Results 1 - 20 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1622 5' -47.6 NC_001347.2 + 229046 0.68 0.999627
Target:  5'- ----uGAAGCgGCGUgGUGUgGGUGCu -3'
miRNA:   3'- auauuUUUUGgCGCAgUACGaCCGCG- -5'
1622 5' -47.6 NC_001347.2 + 228217 0.67 0.999818
Target:  5'- -------cACCGCGUUGUGCccaGCGCc -3'
miRNA:   3'- auauuuuuUGGCGCAGUACGac-CGCG- -5'
1622 5' -47.6 NC_001347.2 + 221006 0.67 0.999767
Target:  5'- cGUGAGAuuguACaGCGUCAgauuUUGGCGCg -3'
miRNA:   3'- aUAUUUUu---UGgCGCAGUac--GACCGCG- -5'
1622 5' -47.6 NC_001347.2 + 219051 0.68 0.999112
Target:  5'- ---uAGAAACgGUGgu-UGCUGGUGCa -3'
miRNA:   3'- auauUUUUUGgCGCaguACGACCGCG- -5'
1622 5' -47.6 NC_001347.2 + 210886 0.66 0.999965
Target:  5'- -------cGCCGCGcCA-GCUGGCa- -3'
miRNA:   3'- auauuuuuUGGCGCaGUaCGACCGcg -5'
1622 5' -47.6 NC_001347.2 + 210181 0.67 0.999891
Target:  5'- --------cUCGCGUCGUGCcugacGGUGCu -3'
miRNA:   3'- auauuuuuuGGCGCAGUACGa----CCGCG- -5'
1622 5' -47.6 NC_001347.2 + 208118 0.76 0.902549
Target:  5'- ----cGGAGCCGCGUCGcucGCcGGCGCu -3'
miRNA:   3'- auauuUUUUGGCGCAGUa--CGaCCGCG- -5'
1622 5' -47.6 NC_001347.2 + 208076 0.67 0.999891
Target:  5'- -------uGCCGCGUCGgguaccgcUGCcgcagaugGGCGCa -3'
miRNA:   3'- auauuuuuUGGCGCAGU--------ACGa-------CCGCG- -5'
1622 5' -47.6 NC_001347.2 + 208037 0.66 0.999969
Target:  5'- ----uGGGACCGaCGUCGgagucgcggcguucGUUGGCGCc -3'
miRNA:   3'- auauuUUUUGGC-GCAGUa-------------CGACCGCG- -5'
1622 5' -47.6 NC_001347.2 + 206844 0.68 0.999417
Target:  5'- gUGUGAAGAGCgCGUGaucCAUGCUcguggcaacGGCGUg -3'
miRNA:   3'- -AUAUUUUUUG-GCGCa--GUACGA---------CCGCG- -5'
1622 5' -47.6 NC_001347.2 + 203748 0.66 0.999917
Target:  5'- aGUucAAAGUC-CGUCAUGCUGGCauGCa -3'
miRNA:   3'- aUAuuUUUUGGcGCAGUACGACCG--CG- -5'
1622 5' -47.6 NC_001347.2 + 201472 0.7 0.996763
Target:  5'- ---cAAAGACCGCugccUCGUuauccggcgucGCUGGCGCu -3'
miRNA:   3'- auauUUUUUGGCGc---AGUA-----------CGACCGCG- -5'
1622 5' -47.6 NC_001347.2 + 200600 0.75 0.937466
Target:  5'- cAUGGAGuuuGCgCGCGUCggGCUGcGCGCc -3'
miRNA:   3'- aUAUUUUu--UG-GCGCAGuaCGAC-CGCG- -5'
1622 5' -47.6 NC_001347.2 + 196844 0.67 0.999891
Target:  5'- cGUGGAGAccuuCUGCGacuuucUCGaGCUGGUGCa -3'
miRNA:   3'- aUAUUUUUu---GGCGC------AGUaCGACCGCG- -5'
1622 5' -47.6 NC_001347.2 + 194875 0.69 0.998914
Target:  5'- ------cGACCGCGcCAaucUGCUGcGCGUa -3'
miRNA:   3'- auauuuuUUGGCGCaGU---ACGAC-CGCG- -5'
1622 5' -47.6 NC_001347.2 + 194710 0.67 0.999704
Target:  5'- ---cGAGGACaagGUGUaCGUGCUGGgGCu -3'
miRNA:   3'- auauUUUUUGg--CGCA-GUACGACCgCG- -5'
1622 5' -47.6 NC_001347.2 + 194046 0.72 0.986254
Target:  5'- ------cGugCGCGUgGgGCUGGCGCu -3'
miRNA:   3'- auauuuuUugGCGCAgUaCGACCGCG- -5'
1622 5' -47.6 NC_001347.2 + 193893 0.66 0.999953
Target:  5'- -----cGAGCC-CGUCAUGCcgcugGGCGa -3'
miRNA:   3'- auauuuUUUGGcGCAGUACGa----CCGCg -5'
1622 5' -47.6 NC_001347.2 + 193261 0.68 0.999278
Target:  5'- cUAUGAGGGccuGCgGCGUUAcuUGC-GGCGCu -3'
miRNA:   3'- -AUAUUUUU---UGgCGCAGU--ACGaCCGCG- -5'
1622 5' -47.6 NC_001347.2 + 192643 0.67 0.999859
Target:  5'- cGUGGAGAcGCUGCGUCGguuucUGCgcGGCGa -3'
miRNA:   3'- aUAUUUUU-UGGCGCAGU-----ACGa-CCGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.