Results 1 - 20 of 99 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1622 | 5' | -47.6 | NC_001347.2 | + | 76134 | 0.79 | 0.806557 |
Target: 5'- --gAAAAAGCCGCGUCAUcucgGC-GGCGUa -3' miRNA: 3'- auaUUUUUUGGCGCAGUA----CGaCCGCG- -5' |
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1622 | 5' | -47.6 | NC_001347.2 | + | 124985 | 0.66 | 0.999937 |
Target: 5'- gGUGAGAc-CCGCGUCc--CUGGgGCu -3' miRNA: 3'- aUAUUUUuuGGCGCAGuacGACCgCG- -5' |
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1622 | 5' | -47.6 | NC_001347.2 | + | 180761 | 0.66 | 0.999937 |
Target: 5'- ------cGACUGCGUCuacgaGCUGGCa- -3' miRNA: 3'- auauuuuUUGGCGCAGua---CGACCGcg -5' |
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1622 | 5' | -47.6 | NC_001347.2 | + | 193893 | 0.66 | 0.999953 |
Target: 5'- -----cGAGCC-CGUCAUGCcgcugGGCGa -3' miRNA: 3'- auauuuUUUGGcGCAGUACGa----CCGCg -5' |
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1622 | 5' | -47.6 | NC_001347.2 | + | 112640 | 0.66 | 0.999917 |
Target: 5'- gGUAAuAGGCCG-GUgAUGgUGGCGg -3' miRNA: 3'- aUAUUuUUUGGCgCAgUACgACCGCg -5' |
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1622 | 5' | -47.6 | NC_001347.2 | + | 39156 | 0.66 | 0.999915 |
Target: 5'- --------cCCGCGUCGcgcUGCgaccacuugcgcaUGGCGCg -3' miRNA: 3'- auauuuuuuGGCGCAGU---ACG-------------ACCGCG- -5' |
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1622 | 5' | -47.6 | NC_001347.2 | + | 17101 | 0.66 | 0.999917 |
Target: 5'- --gGAAAcgacGGCCGCGcCAUGCcGGuCGUc -3' miRNA: 3'- auaUUUU----UUGGCGCaGUACGaCC-GCG- -5' |
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1622 | 5' | -47.6 | NC_001347.2 | + | 183140 | 0.66 | 0.999917 |
Target: 5'- --cGAAAGucuGCCGCGUCucggggGCUuGCGUg -3' miRNA: 3'- auaUUUUU---UGGCGCAGua----CGAcCGCG- -5' |
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1622 | 5' | -47.6 | NC_001347.2 | + | 159261 | 0.67 | 0.999891 |
Target: 5'- cGUGAuAGGCgGCGaggcgaaacUgGUGCUGGCGg -3' miRNA: 3'- aUAUUuUUUGgCGC---------AgUACGACCGCg -5' |
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1622 | 5' | -47.6 | NC_001347.2 | + | 68461 | 0.66 | 0.999937 |
Target: 5'- cAUGAAGcccuGCUGCGUC---UUGGCGCc -3' miRNA: 3'- aUAUUUUu---UGGCGCAGuacGACCGCG- -5' |
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1622 | 5' | -47.6 | NC_001347.2 | + | 203748 | 0.66 | 0.999917 |
Target: 5'- aGUucAAAGUC-CGUCAUGCUGGCauGCa -3' miRNA: 3'- aUAuuUUUUGGcGCAGUACGACCG--CG- -5' |
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1622 | 5' | -47.6 | NC_001347.2 | + | 162118 | 0.66 | 0.999953 |
Target: 5'- -----cGGGCCGCGUCGgccUGCUGaucuagcaGCGUu -3' miRNA: 3'- auauuuUUUGGCGCAGU---ACGAC--------CGCG- -5' |
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1622 | 5' | -47.6 | NC_001347.2 | + | 136450 | 0.66 | 0.999965 |
Target: 5'- aGUGGAAuuuuACCgGCG-CAUGCgcagGGCGa -3' miRNA: 3'- aUAUUUUu---UGG-CGCaGUACGa---CCGCg -5' |
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1622 | 5' | -47.6 | NC_001347.2 | + | 210886 | 0.66 | 0.999965 |
Target: 5'- -------cGCCGCGcCA-GCUGGCa- -3' miRNA: 3'- auauuuuuUGGCGCaGUaCGACCGcg -5' |
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1622 | 5' | -47.6 | NC_001347.2 | + | 163946 | 0.66 | 0.999965 |
Target: 5'- aUGUGAuuGugcACgCGCGUCAgcaGCUGcGUGCu -3' miRNA: 3'- -AUAUUuuU---UG-GCGCAGUa--CGAC-CGCG- -5' |
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1622 | 5' | -47.6 | NC_001347.2 | + | 15003 | 0.66 | 0.999965 |
Target: 5'- gGUGGAGAGCCGuCGUUGgugguggGCUGuccGUGCu -3' miRNA: 3'- aUAUUUUUUGGC-GCAGUa------CGAC---CGCG- -5' |
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1622 | 5' | -47.6 | NC_001347.2 | + | 25405 | 0.66 | 0.999965 |
Target: 5'- ------uGACCGCGU--UGUUGaGCGCc -3' miRNA: 3'- auauuuuUUGGCGCAguACGAC-CGCG- -5' |
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1622 | 5' | -47.6 | NC_001347.2 | + | 182507 | 0.66 | 0.99996 |
Target: 5'- --gAAGAAGCCGCGUCGgucacaggacGGCGa -3' miRNA: 3'- auaUUUUUUGGCGCAGUacga------CCGCg -5' |
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1622 | 5' | -47.6 | NC_001347.2 | + | 5105 | 0.66 | 0.99996 |
Target: 5'- cAUGAuAAACCGCGUCAaucccaacgagucaUGCacccgcacgcguuUGGCauGCg -3' miRNA: 3'- aUAUUuUUUGGCGCAGU--------------ACG-------------ACCG--CG- -5' |
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1622 | 5' | -47.6 | NC_001347.2 | + | 191588 | 0.66 | 0.999953 |
Target: 5'- cGUucGAGGCCGUGUUGuacUGCUcGGUGUg -3' miRNA: 3'- aUAuuUUUUGGCGCAGU---ACGA-CCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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