miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16220 3' -55.2 NC_004065.1 + 33281 0.66 0.973213
Target:  5'- gUCCGAuuacugccaGGAGAACa-GCGGG-CGCGa- -3'
miRNA:   3'- -AGGCU---------UUUCUUGgcCGCCCuGCGCaa -5'
16220 3' -55.2 NC_004065.1 + 34439 0.66 0.973213
Target:  5'- -aCGGAucGcacGGCCGG-GGGACGCGa- -3'
miRNA:   3'- agGCUUuuC---UUGGCCgCCCUGCGCaa -5'
16220 3' -55.2 NC_004065.1 + 18168 0.66 0.973213
Target:  5'- aCCGuguGGAGcGCCGGcCGGGACuccCGUg -3'
miRNA:   3'- aGGCu--UUUCuUGGCC-GCCCUGc--GCAa -5'
16220 3' -55.2 NC_004065.1 + 165653 0.66 0.973213
Target:  5'- cUCGGAcAGAGCCuGCGG-ACGCGa- -3'
miRNA:   3'- aGGCUUuUCUUGGcCGCCcUGCGCaa -5'
16220 3' -55.2 NC_004065.1 + 162686 0.66 0.973213
Target:  5'- gUCCGGAgcGccauucGACCGGCGGGuaGCGa- -3'
miRNA:   3'- -AGGCUUuuC------UUGGCCGCCCugCGCaa -5'
16220 3' -55.2 NC_004065.1 + 33648 0.66 0.973213
Target:  5'- cUCGuuGAcGAGCCGGCGGaGAUaGCGg- -3'
miRNA:   3'- aGGCuuUU-CUUGGCCGCC-CUG-CGCaa -5'
16220 3' -55.2 NC_004065.1 + 128387 0.66 0.973213
Target:  5'- -gCGgcGAGAGCCGGCugugGGGGCcgaGCGg- -3'
miRNA:   3'- agGCuuUUCUUGGCCG----CCCUG---CGCaa -5'
16220 3' -55.2 NC_004065.1 + 98135 0.66 0.970478
Target:  5'- gUCCGGAGAGGuCUGGCGGuGAuaguCGCc-- -3'
miRNA:   3'- -AGGCUUUUCUuGGCCGCC-CU----GCGcaa -5'
16220 3' -55.2 NC_004065.1 + 62002 0.66 0.970478
Target:  5'- cCCGcGAAcacAGAACCGGCccgaGACGCGUc -3'
miRNA:   3'- aGGC-UUU---UCUUGGCCGcc--CUGCGCAa -5'
16220 3' -55.2 NC_004065.1 + 50835 0.66 0.970478
Target:  5'- cCCGAAGAGAACgugaacGCcGGGCGCGg- -3'
miRNA:   3'- aGGCUUUUCUUGgc----CGcCCUGCGCaa -5'
16220 3' -55.2 NC_004065.1 + 114843 0.66 0.970478
Target:  5'- cUCCGgcAGGAAgaGGagacguCGGGGCGCGg- -3'
miRNA:   3'- -AGGCuuUUCUUggCC------GCCCUGCGCaa -5'
16220 3' -55.2 NC_004065.1 + 28116 0.66 0.970478
Target:  5'- aCCGuugaaGAAAGAcCCGGUcuGGGACGCc-- -3'
miRNA:   3'- aGGC-----UUUUCUuGGCCG--CCCUGCGcaa -5'
16220 3' -55.2 NC_004065.1 + 221996 0.66 0.970478
Target:  5'- cCCGAAGAcGAuACCGcGUGGGACuGCa-- -3'
miRNA:   3'- aGGCUUUU-CU-UGGC-CGCCCUG-CGcaa -5'
16220 3' -55.2 NC_004065.1 + 60553 0.66 0.970194
Target:  5'- gCCGGAgacgacgGAGAcgccggguccgcACaCGGCGGGGCGCc-- -3'
miRNA:   3'- aGGCUU-------UUCU------------UG-GCCGCCCUGCGcaa -5'
16220 3' -55.2 NC_004065.1 + 122224 0.66 0.967549
Target:  5'- gUCCucGAGcGGGCCGGCGGGuCGUu-- -3'
miRNA:   3'- -AGGcuUUU-CUUGGCCGCCCuGCGcaa -5'
16220 3' -55.2 NC_004065.1 + 222499 0.66 0.967549
Target:  5'- aUCgGAAaacuGAGGGCCaGGUcGGAUGCGUUg -3'
miRNA:   3'- -AGgCUU----UUCUUGG-CCGcCCUGCGCAA- -5'
16220 3' -55.2 NC_004065.1 + 208249 0.66 0.967549
Target:  5'- aCCGA--GGAGCCGaCGGaACGCGg- -3'
miRNA:   3'- aGGCUuuUCUUGGCcGCCcUGCGCaa -5'
16220 3' -55.2 NC_004065.1 + 135254 0.66 0.964419
Target:  5'- gUCCGAGGAGAuggaggACCGGCuGGccagguuCGCGc- -3'
miRNA:   3'- -AGGCUUUUCU------UGGCCGcCCu------GCGCaa -5'
16220 3' -55.2 NC_004065.1 + 75795 0.66 0.961084
Target:  5'- -gCGAGGGGGAgCGGCGGcGAgGCa-- -3'
miRNA:   3'- agGCUUUUCUUgGCCGCC-CUgCGcaa -5'
16220 3' -55.2 NC_004065.1 + 103712 0.66 0.961084
Target:  5'- -gCGggGAGcGCCuGGCGGG-CGUGa- -3'
miRNA:   3'- agGCuuUUCuUGG-CCGCCCuGCGCaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.