Results 41 - 60 of 79 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
16220 | 3' | -55.2 | NC_004065.1 | + | 118720 | 0.67 | 0.941178 |
Target: 5'- gCCGAcGAGAuccuuGCCGGCGG-AgGUGUUg -3' miRNA: 3'- aGGCUuUUCU-----UGGCCGCCcUgCGCAA- -5' |
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16220 | 3' | -55.2 | NC_004065.1 | + | 176778 | 0.68 | 0.915643 |
Target: 5'- gUUCGAcacGAucgcGCCGGCGGaGCGCGUUg -3' miRNA: 3'- -AGGCUuuuCU----UGGCCGCCcUGCGCAA- -5' |
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16220 | 3' | -55.2 | NC_004065.1 | + | 31731 | 0.68 | 0.90747 |
Target: 5'- cCCGAGuucaagcggugcuGGAACgCGGUGucGGACGCGUUg -3' miRNA: 3'- aGGCUUu------------UCUUG-GCCGC--CCUGCGCAA- -5' |
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16220 | 3' | -55.2 | NC_004065.1 | + | 164551 | 0.68 | 0.915643 |
Target: 5'- gCUGuGucGAGCCGGCGGcGGCGCc-- -3' miRNA: 3'- aGGCuUuuCUUGGCCGCC-CUGCGcaa -5' |
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16220 | 3' | -55.2 | NC_004065.1 | + | 229145 | 0.68 | 0.915643 |
Target: 5'- cCUGu--AGcauGCCGGCGGGGCGCc-- -3' miRNA: 3'- aGGCuuuUCu--UGGCCGCCCUGCGcaa -5' |
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16220 | 3' | -55.2 | NC_004065.1 | + | 167593 | 0.68 | 0.921207 |
Target: 5'- gUCUGAuguGGGuGCUGGCGGGGCuGuCGUUa -3' miRNA: 3'- -AGGCUu--UUCuUGGCCGCCCUG-C-GCAA- -5' |
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16220 | 3' | -55.2 | NC_004065.1 | + | 33291 | 0.68 | 0.926543 |
Target: 5'- gCCGAuguuGGGGuaGGCGGcGACGCGa- -3' miRNA: 3'- aGGCUuu--UCUUggCCGCC-CUGCGCaa -5' |
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16220 | 3' | -55.2 | NC_004065.1 | + | 128245 | 0.68 | 0.926543 |
Target: 5'- gUCCGAuguacuAAGAGCCGGaaGGACgaacucaaaaauGCGUUg -3' miRNA: 3'- -AGGCUu-----UUCUUGGCCgcCCUG------------CGCAA- -5' |
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16220 | 3' | -55.2 | NC_004065.1 | + | 228946 | 0.68 | 0.93165 |
Target: 5'- uUCCGAGAAGucaGACCGaugaGCGGGAacggacaGCGa- -3' miRNA: 3'- -AGGCUUUUC---UUGGC----CGCCCUg------CGCaa -5' |
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16220 | 3' | -55.2 | NC_004065.1 | + | 87006 | 0.68 | 0.926543 |
Target: 5'- cUCCGAAAcGAcGCCGGUGcGACGuCGUUu -3' miRNA: 3'- -AGGCUUUuCU-UGGCCGCcCUGC-GCAA- -5' |
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16220 | 3' | -55.2 | NC_004065.1 | + | 106255 | 0.69 | 0.877552 |
Target: 5'- gUCCGAcAGGcGACCGGCGcGcGGCGCa-- -3' miRNA: 3'- -AGGCUuUUC-UUGGCCGC-C-CUGCGcaa -5' |
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16220 | 3' | -55.2 | NC_004065.1 | + | 214210 | 0.69 | 0.891128 |
Target: 5'- aCCGggGuGAucauuuguagACgGGCGGGACGCu-- -3' miRNA: 3'- aGGCuuUuCU----------UGgCCGCCCUGCGcaa -5' |
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16220 | 3' | -55.2 | NC_004065.1 | + | 674 | 0.69 | 0.891128 |
Target: 5'- cCCGggGAGuAUUGGCGGGGCacccccccccGCGg- -3' miRNA: 3'- aGGCuuUUCuUGGCCGCCCUG----------CGCaa -5' |
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16220 | 3' | -55.2 | NC_004065.1 | + | 149894 | 0.69 | 0.883767 |
Target: 5'- cCCGAAcccGAGGguGCCGGUuggaugaGGGGCGCGc- -3' miRNA: 3'- aGGCUU---UUCU--UGGCCG-------CCCUGCGCaa -5' |
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16220 | 3' | -55.2 | NC_004065.1 | + | 55398 | 0.69 | 0.882401 |
Target: 5'- cCCGAGcGGAcagaagACCGGCcugaugggcuguccGGGGCGCGg- -3' miRNA: 3'- aGGCUUuUCU------UGGCCG--------------CCCUGCGCaa -5' |
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16220 | 3' | -55.2 | NC_004065.1 | + | 35564 | 0.69 | 0.877552 |
Target: 5'- cUCCGAGAAGGcgGCCacaGGCGgaaucGGugGCGUc -3' miRNA: 3'- -AGGCUUUUCU--UGG---CCGC-----CCugCGCAa -5' |
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16220 | 3' | -55.2 | NC_004065.1 | + | 174411 | 0.7 | 0.840039 |
Target: 5'- -aCGAGAaAGAGCgGGaGGGACGCGg- -3' miRNA: 3'- agGCUUU-UCUUGgCCgCCCUGCGCaa -5' |
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16220 | 3' | -55.2 | NC_004065.1 | + | 93233 | 0.7 | 0.831968 |
Target: 5'- gCCGAcGAAGcGGCCGGUGGGAuCGaCGUg -3' miRNA: 3'- aGGCU-UUUC-UUGGCCGCCCU-GC-GCAa -5' |
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16220 | 3' | -55.2 | NC_004065.1 | + | 148864 | 0.7 | 0.831968 |
Target: 5'- aUCGAGGAGGcGgCGGCGGGGgGCGa- -3' miRNA: 3'- aGGCUUUUCU-UgGCCGCCCUgCGCaa -5' |
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16220 | 3' | -55.2 | NC_004065.1 | + | 65314 | 0.7 | 0.863139 |
Target: 5'- cCCGcgugguGGGACCGGCGGcGGCgGCGg- -3' miRNA: 3'- aGGCuuu---UCUUGGCCGCC-CUG-CGCaa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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