miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16220 3' -55.2 NC_004065.1 + 207820 1.05 0.009031
Target:  5'- aUCCGAAAAGAACCGGCGGGACGCGUUc -3'
miRNA:   3'- -AGGCUUUUCUUGGCCGCCCUGCGCAA- -5'
16220 3' -55.2 NC_004065.1 + 78049 0.76 0.516332
Target:  5'- cCUGAuGAG-GCCGGCGGGGCGCa-- -3'
miRNA:   3'- aGGCUuUUCuUGGCCGCCCUGCGcaa -5'
16220 3' -55.2 NC_004065.1 + 42228 0.76 0.555105
Target:  5'- --gGAGAGGGAUCGGCGGGggGCGCGa- -3'
miRNA:   3'- aggCUUUUCUUGGCCGCCC--UGCGCaa -5'
16220 3' -55.2 NC_004065.1 + 136243 0.74 0.624666
Target:  5'- gCCGGAcAGGAACCGggaGCGGGGCGCu-- -3'
miRNA:   3'- aGGCUU-UUCUUGGC---CGCCCUGCGcaa -5'
16220 3' -55.2 NC_004065.1 + 127473 0.74 0.663683
Target:  5'- cCCGggGAGGuggucggGCgCGGCGGGA-GCGUUg -3'
miRNA:   3'- aGGCuuUUCU-------UG-GCCGCCCUgCGCAA- -5'
16220 3' -55.2 NC_004065.1 + 27276 0.74 0.664681
Target:  5'- -aCGAAGAG-ACCGGCGGcgccgccgacGACGCGUc -3'
miRNA:   3'- agGCUUUUCuUGGCCGCC----------CUGCGCAa -5'
16220 3' -55.2 NC_004065.1 + 64893 0.73 0.704289
Target:  5'- gUCgGAGAAGAgcggcgccagucGCCgGGCGGGACGCc-- -3'
miRNA:   3'- -AGgCUUUUCU------------UGG-CCGCCCUGCGcaa -5'
16220 3' -55.2 NC_004065.1 + 38529 0.72 0.733412
Target:  5'- gCCGAGgcacGAGAACCuGGgGGGAcaCGCGUg -3'
miRNA:   3'- aGGCUU----UUCUUGG-CCgCCCU--GCGCAa -5'
16220 3' -55.2 NC_004065.1 + 184860 0.72 0.742963
Target:  5'- aUCGAGucGAGCgggCGGCGGGACGCc-- -3'
miRNA:   3'- aGGCUUuuCUUG---GCCGCCCUGCGcaa -5'
16220 3' -55.2 NC_004065.1 + 223893 0.72 0.761778
Target:  5'- -aCGAGuAGGAGCUGGCGGcGGCgGCGUg -3'
miRNA:   3'- agGCUU-UUCUUGGCCGCC-CUG-CGCAa -5'
16220 3' -55.2 NC_004065.1 + 38213 0.72 0.771025
Target:  5'- cCCGugcGGAGGACgGGCGGGGUGUGUa -3'
miRNA:   3'- aGGCu--UUUCUUGgCCGCCCUGCGCAa -5'
16220 3' -55.2 NC_004065.1 + 122659 0.71 0.780153
Target:  5'- cCCGAGAAGAcgGgCGGCaGGGugGUGa- -3'
miRNA:   3'- aGGCUUUUCU--UgGCCG-CCCugCGCaa -5'
16220 3' -55.2 NC_004065.1 + 80312 0.71 0.789154
Target:  5'- gUCCGA---GGGCCGGCGcGGcCGCGg- -3'
miRNA:   3'- -AGGCUuuuCUUGGCCGC-CCuGCGCaa -5'
16220 3' -55.2 NC_004065.1 + 119002 0.71 0.79802
Target:  5'- -aUGAAGAGGGCCGcGUGguuGGACGCGUg -3'
miRNA:   3'- agGCUUUUCUUGGC-CGC---CCUGCGCAa -5'
16220 3' -55.2 NC_004065.1 + 83229 0.71 0.806742
Target:  5'- gCCGGGAGGAGCauacugcaCGGCggucuGGGugGCGUa -3'
miRNA:   3'- aGGCUUUUCUUG--------GCCG-----CCCugCGCAa -5'
16220 3' -55.2 NC_004065.1 + 94730 0.71 0.806742
Target:  5'- gCCGAAGuc-GgCGGCGGaGACGCGUUu -3'
miRNA:   3'- aGGCUUUucuUgGCCGCC-CUGCGCAA- -5'
16220 3' -55.2 NC_004065.1 + 206831 0.71 0.823724
Target:  5'- aUUCGGGcGGGAUCGGCGGGGC-CGa- -3'
miRNA:   3'- -AGGCUUuUCUUGGCCGCCCUGcGCaa -5'
16220 3' -55.2 NC_004065.1 + 93233 0.7 0.831968
Target:  5'- gCCGAcGAAGcGGCCGGUGGGAuCGaCGUg -3'
miRNA:   3'- aGGCU-UUUC-UUGGCCGCCCU-GC-GCAa -5'
16220 3' -55.2 NC_004065.1 + 148864 0.7 0.831968
Target:  5'- aUCGAGGAGGcGgCGGCGGGGgGCGa- -3'
miRNA:   3'- aGGCUUUUCU-UgGCCGCCCUgCGCaa -5'
16220 3' -55.2 NC_004065.1 + 32839 0.7 0.840039
Target:  5'- gUCCGAGAAGGugaGCCGGUccaGCGCGUUg -3'
miRNA:   3'- -AGGCUUUUCU---UGGCCGcccUGCGCAA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.