miRNA display CGI


Results 21 - 40 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16220 3' -55.2 NC_004065.1 + 119992 0.66 0.960739
Target:  5'- gCCGAgcgggugGAAGAACaCGGCGGG-CG-GUg -3'
miRNA:   3'- aGGCU-------UUUCUUG-GCCGCCCuGCgCAa -5'
16220 3' -55.2 NC_004065.1 + 59192 0.67 0.957539
Target:  5'- -gCGAAAAcGAACCa-CGGGAUGCGUc -3'
miRNA:   3'- agGCUUUU-CUUGGccGCCCUGCGCAa -5'
16220 3' -55.2 NC_004065.1 + 105694 0.67 0.957539
Target:  5'- cUCGGAcccGGGACUGGCGGcGACgGCGa- -3'
miRNA:   3'- aGGCUUu--UCUUGGCCGCC-CUG-CGCaa -5'
16220 3' -55.2 NC_004065.1 + 7315 0.67 0.957539
Target:  5'- cCUGAcgAucGAGCCGGUGguaccGGACGCGg- -3'
miRNA:   3'- aGGCU--UuuCUUGGCCGC-----CCUGCGCaa -5'
16220 3' -55.2 NC_004065.1 + 109619 0.67 0.95378
Target:  5'- -gCGAGAAGAACgCGGCGaaGGAgcaGCGUc -3'
miRNA:   3'- agGCUUUUCUUG-GCCGC--CCUg--CGCAa -5'
16220 3' -55.2 NC_004065.1 + 124350 0.67 0.95378
Target:  5'- gUCCGAGuAGAACCGGUggaagGGGAUcacCGUc -3'
miRNA:   3'- -AGGCUUuUCUUGGCCG-----CCCUGc--GCAa -5'
16220 3' -55.2 NC_004065.1 + 139186 0.67 0.95378
Target:  5'- cCCGAucaucaucAAGGACUGuCGGGAUGCGg- -3'
miRNA:   3'- aGGCUu-------UUCUUGGCcGCCCUGCGCaa -5'
16220 3' -55.2 NC_004065.1 + 65546 0.67 0.95378
Target:  5'- gCUGAcgcuGGGcgcgucGCCGGCGGGuCGCGa- -3'
miRNA:   3'- aGGCUuu--UCU------UGGCCGCCCuGCGCaa -5'
16220 3' -55.2 NC_004065.1 + 85794 0.67 0.95378
Target:  5'- aCCGAGgcgcGAGAACCGGCGucGGCGagaGUc -3'
miRNA:   3'- aGGCUU----UUCUUGGCCGCc-CUGCg--CAa -5'
16220 3' -55.2 NC_004065.1 + 65210 0.67 0.95378
Target:  5'- cUCgGAAAcggccAGAguGCCGGCGGuGGCGCc-- -3'
miRNA:   3'- -AGgCUUU-----UCU--UGGCCGCC-CUGCGcaa -5'
16220 3' -55.2 NC_004065.1 + 168640 0.67 0.949802
Target:  5'- -gCGGGcGGAGCCGGCGcGGCGaCGUc -3'
miRNA:   3'- agGCUUuUCUUGGCCGCcCUGC-GCAa -5'
16220 3' -55.2 NC_004065.1 + 127228 0.67 0.945602
Target:  5'- gCCGcGAGGAuCgGGCGcGGugGCGg- -3'
miRNA:   3'- aGGCuUUUCUuGgCCGC-CCugCGCaa -5'
16220 3' -55.2 NC_004065.1 + 120080 0.67 0.945602
Target:  5'- gCCGGAGAGGcgacucaugACCuccCGGGACGCGa- -3'
miRNA:   3'- aGGCUUUUCU---------UGGcc-GCCCUGCGCaa -5'
16220 3' -55.2 NC_004065.1 + 131013 0.67 0.945602
Target:  5'- aUCCGcgGAGAccAgCGGCGGaACGUGUg -3'
miRNA:   3'- -AGGCuuUUCU--UgGCCGCCcUGCGCAa -5'
16220 3' -55.2 NC_004065.1 + 34597 0.67 0.945602
Target:  5'- gUCCGAcgacGGcGACgCGGCGGGA-GCGUa -3'
miRNA:   3'- -AGGCUuu--UC-UUG-GCCGCCCUgCGCAa -5'
16220 3' -55.2 NC_004065.1 + 1799 0.67 0.941178
Target:  5'- cCCGGucuGAACgCGGCGGcGAuCGCGg- -3'
miRNA:   3'- aGGCUuuuCUUG-GCCGCC-CU-GCGCaa -5'
16220 3' -55.2 NC_004065.1 + 118720 0.67 0.941178
Target:  5'- gCCGAcGAGAuccuuGCCGGCGG-AgGUGUUg -3'
miRNA:   3'- aGGCUuUUCU-----UGGCCGCCcUgCGCAA- -5'
16220 3' -55.2 NC_004065.1 + 139478 0.67 0.941178
Target:  5'- gUUCGAGGGGGccguCgGGCGGGACGagaaGUa -3'
miRNA:   3'- -AGGCUUUUCUu---GgCCGCCCUGCg---CAa -5'
16220 3' -55.2 NC_004065.1 + 120545 0.67 0.941178
Target:  5'- cUCCGGu--GuGCCGGCGGcggucGGCGCGa- -3'
miRNA:   3'- -AGGCUuuuCuUGGCCGCC-----CUGCGCaa -5'
16220 3' -55.2 NC_004065.1 + 163629 0.67 0.941178
Target:  5'- cUCCGGAucGAG-CGGCGGcGGCgGCGg- -3'
miRNA:   3'- -AGGCUUuuCUUgGCCGCC-CUG-CGCaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.