miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16220 3' -55.2 NC_004065.1 + 674 0.69 0.891128
Target:  5'- cCCGggGAGuAUUGGCGGGGCacccccccccGCGg- -3'
miRNA:   3'- aGGCuuUUCuUGGCCGCCCUG----------CGCaa -5'
16220 3' -55.2 NC_004065.1 + 1799 0.67 0.941178
Target:  5'- cCCGGucuGAACgCGGCGGcGAuCGCGg- -3'
miRNA:   3'- aGGCUuuuCUUG-GCCGCC-CU-GCGCaa -5'
16220 3' -55.2 NC_004065.1 + 7315 0.67 0.957539
Target:  5'- cCUGAcgAucGAGCCGGUGguaccGGACGCGg- -3'
miRNA:   3'- aGGCU--UuuCUUGGCCGC-----CCUGCGCaa -5'
16220 3' -55.2 NC_004065.1 + 18168 0.66 0.973213
Target:  5'- aCCGuguGGAGcGCCGGcCGGGACuccCGUg -3'
miRNA:   3'- aGGCu--UUUCuUGGCC-GCCCUGc--GCAa -5'
16220 3' -55.2 NC_004065.1 + 27276 0.74 0.664681
Target:  5'- -aCGAAGAG-ACCGGCGGcgccgccgacGACGCGUc -3'
miRNA:   3'- agGCUUUUCuUGGCCGCC----------CUGCGCAa -5'
16220 3' -55.2 NC_004065.1 + 28116 0.66 0.970478
Target:  5'- aCCGuugaaGAAAGAcCCGGUcuGGGACGCc-- -3'
miRNA:   3'- aGGC-----UUUUCUuGGCCG--CCCUGCGcaa -5'
16220 3' -55.2 NC_004065.1 + 31731 0.68 0.90747
Target:  5'- cCCGAGuucaagcggugcuGGAACgCGGUGucGGACGCGUUg -3'
miRNA:   3'- aGGCUUu------------UCUUG-GCCGC--CCUGCGCAA- -5'
16220 3' -55.2 NC_004065.1 + 32839 0.7 0.840039
Target:  5'- gUCCGAGAAGGugaGCCGGUccaGCGCGUUg -3'
miRNA:   3'- -AGGCUUUUCU---UGGCCGcccUGCGCAA- -5'
16220 3' -55.2 NC_004065.1 + 33281 0.66 0.973213
Target:  5'- gUCCGAuuacugccaGGAGAACa-GCGGG-CGCGa- -3'
miRNA:   3'- -AGGCU---------UUUCUUGgcCGCCCuGCGCaa -5'
16220 3' -55.2 NC_004065.1 + 33291 0.68 0.926543
Target:  5'- gCCGAuguuGGGGuaGGCGGcGACGCGa- -3'
miRNA:   3'- aGGCUuu--UCUUggCCGCC-CUGCGCaa -5'
16220 3' -55.2 NC_004065.1 + 33648 0.66 0.973213
Target:  5'- cUCGuuGAcGAGCCGGCGGaGAUaGCGg- -3'
miRNA:   3'- aGGCuuUU-CUUGGCCGCC-CUG-CGCaa -5'
16220 3' -55.2 NC_004065.1 + 34439 0.66 0.973213
Target:  5'- -aCGGAucGcacGGCCGG-GGGACGCGa- -3'
miRNA:   3'- agGCUUuuC---UUGGCCgCCCUGCGCaa -5'
16220 3' -55.2 NC_004065.1 + 34597 0.67 0.945602
Target:  5'- gUCCGAcgacGGcGACgCGGCGGGA-GCGUa -3'
miRNA:   3'- -AGGCUuu--UC-UUG-GCCGCCCUgCGCAa -5'
16220 3' -55.2 NC_004065.1 + 35564 0.69 0.877552
Target:  5'- cUCCGAGAAGGcgGCCacaGGCGgaaucGGugGCGUc -3'
miRNA:   3'- -AGGCUUUUCU--UGG---CCGC-----CCugCGCAa -5'
16220 3' -55.2 NC_004065.1 + 38213 0.72 0.771025
Target:  5'- cCCGugcGGAGGACgGGCGGGGUGUGUa -3'
miRNA:   3'- aGGCu--UUUCUUGgCCGCCCUGCGCAa -5'
16220 3' -55.2 NC_004065.1 + 38529 0.72 0.733412
Target:  5'- gCCGAGgcacGAGAACCuGGgGGGAcaCGCGUg -3'
miRNA:   3'- aGGCUU----UUCUUGG-CCgCCCU--GCGCAa -5'
16220 3' -55.2 NC_004065.1 + 42228 0.76 0.555105
Target:  5'- --gGAGAGGGAUCGGCGGGggGCGCGa- -3'
miRNA:   3'- aggCUUUUCUUGGCCGCCC--UGCGCaa -5'
16220 3' -55.2 NC_004065.1 + 50835 0.66 0.970478
Target:  5'- cCCGAAGAGAACgugaacGCcGGGCGCGg- -3'
miRNA:   3'- aGGCUUUUCUUGgc----CGcCCUGCGCaa -5'
16220 3' -55.2 NC_004065.1 + 55398 0.69 0.882401
Target:  5'- cCCGAGcGGAcagaagACCGGCcugaugggcuguccGGGGCGCGg- -3'
miRNA:   3'- aGGCUUuUCU------UGGCCG--------------CCCUGCGCaa -5'
16220 3' -55.2 NC_004065.1 + 59192 0.67 0.957539
Target:  5'- -gCGAAAAcGAACCa-CGGGAUGCGUc -3'
miRNA:   3'- agGCUUUU-CUUGGccGCCCUGCGCAa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.