miRNA display CGI


Results 21 - 40 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16220 3' -55.2 NC_004065.1 + 60553 0.66 0.970194
Target:  5'- gCCGGAgacgacgGAGAcgccggguccgcACaCGGCGGGGCGCc-- -3'
miRNA:   3'- aGGCUU-------UUCU------------UG-GCCGCCCUGCGcaa -5'
16220 3' -55.2 NC_004065.1 + 62002 0.66 0.970478
Target:  5'- cCCGcGAAcacAGAACCGGCccgaGACGCGUc -3'
miRNA:   3'- aGGC-UUU---UCUUGGCCGcc--CUGCGCAa -5'
16220 3' -55.2 NC_004065.1 + 64893 0.73 0.704289
Target:  5'- gUCgGAGAAGAgcggcgccagucGCCgGGCGGGACGCc-- -3'
miRNA:   3'- -AGgCUUUUCU------------UGG-CCGCCCUGCGcaa -5'
16220 3' -55.2 NC_004065.1 + 65210 0.67 0.95378
Target:  5'- cUCgGAAAcggccAGAguGCCGGCGGuGGCGCc-- -3'
miRNA:   3'- -AGgCUUU-----UCU--UGGCCGCC-CUGCGcaa -5'
16220 3' -55.2 NC_004065.1 + 65314 0.7 0.863139
Target:  5'- cCCGcgugguGGGACCGGCGGcGGCgGCGg- -3'
miRNA:   3'- aGGCuuu---UCUUGGCCGCC-CUG-CGCaa -5'
16220 3' -55.2 NC_004065.1 + 65546 0.67 0.95378
Target:  5'- gCUGAcgcuGGGcgcgucGCCGGCGGGuCGCGa- -3'
miRNA:   3'- aGGCUuu--UCU------UGGCCGCCCuGCGCaa -5'
16220 3' -55.2 NC_004065.1 + 75795 0.66 0.961084
Target:  5'- -gCGAGGGGGAgCGGCGGcGAgGCa-- -3'
miRNA:   3'- agGCUUUUCUUgGCCGCC-CUgCGcaa -5'
16220 3' -55.2 NC_004065.1 + 78049 0.76 0.516332
Target:  5'- cCUGAuGAG-GCCGGCGGGGCGCa-- -3'
miRNA:   3'- aGGCUuUUCuUGGCCGCCCUGCGcaa -5'
16220 3' -55.2 NC_004065.1 + 80312 0.71 0.789154
Target:  5'- gUCCGA---GGGCCGGCGcGGcCGCGg- -3'
miRNA:   3'- -AGGCUuuuCUUGGCCGC-CCuGCGCaa -5'
16220 3' -55.2 NC_004065.1 + 83229 0.71 0.806742
Target:  5'- gCCGGGAGGAGCauacugcaCGGCggucuGGGugGCGUa -3'
miRNA:   3'- aGGCUUUUCUUG--------GCCG-----CCCugCGCAa -5'
16220 3' -55.2 NC_004065.1 + 85794 0.67 0.95378
Target:  5'- aCCGAGgcgcGAGAACCGGCGucGGCGagaGUc -3'
miRNA:   3'- aGGCUU----UUCUUGGCCGCc-CUGCg--CAa -5'
16220 3' -55.2 NC_004065.1 + 87006 0.68 0.926543
Target:  5'- cUCCGAAAcGAcGCCGGUGcGACGuCGUUu -3'
miRNA:   3'- -AGGCUUUuCU-UGGCCGCcCUGC-GCAA- -5'
16220 3' -55.2 NC_004065.1 + 93233 0.7 0.831968
Target:  5'- gCCGAcGAAGcGGCCGGUGGGAuCGaCGUg -3'
miRNA:   3'- aGGCU-UUUC-UUGGCCGCCCU-GC-GCAa -5'
16220 3' -55.2 NC_004065.1 + 94730 0.71 0.806742
Target:  5'- gCCGAAGuc-GgCGGCGGaGACGCGUUu -3'
miRNA:   3'- aGGCUUUucuUgGCCGCC-CUGCGCAA- -5'
16220 3' -55.2 NC_004065.1 + 98135 0.66 0.970478
Target:  5'- gUCCGGAGAGGuCUGGCGGuGAuaguCGCc-- -3'
miRNA:   3'- -AGGCUUUUCUuGGCCGCC-CU----GCGcaa -5'
16220 3' -55.2 NC_004065.1 + 103712 0.66 0.961084
Target:  5'- -gCGggGAGcGCCuGGCGGG-CGUGa- -3'
miRNA:   3'- agGCuuUUCuUGG-CCGCCCuGCGCaa -5'
16220 3' -55.2 NC_004065.1 + 105694 0.67 0.957539
Target:  5'- cUCGGAcccGGGACUGGCGGcGACgGCGa- -3'
miRNA:   3'- aGGCUUu--UCUUGGCCGCC-CUG-CGCaa -5'
16220 3' -55.2 NC_004065.1 + 106255 0.69 0.877552
Target:  5'- gUCCGAcAGGcGACCGGCGcGcGGCGCa-- -3'
miRNA:   3'- -AGGCUuUUC-UUGGCCGC-C-CUGCGcaa -5'
16220 3' -55.2 NC_004065.1 + 106930 0.7 0.840039
Target:  5'- gUCCGuguuGAcauUCGGCGGGAUGCGa- -3'
miRNA:   3'- -AGGCuuuuCUu--GGCCGCCCUGCGCaa -5'
16220 3' -55.2 NC_004065.1 + 109619 0.67 0.95378
Target:  5'- -gCGAGAAGAACgCGGCGaaGGAgcaGCGUc -3'
miRNA:   3'- agGCUUUUCUUG-GCCGC--CCUg--CGCAa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.