miRNA display CGI


Results 41 - 60 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16220 3' -55.2 NC_004065.1 + 114843 0.66 0.970478
Target:  5'- cUCCGgcAGGAAgaGGagacguCGGGGCGCGg- -3'
miRNA:   3'- -AGGCuuUUCUUggCC------GCCCUGCGCaa -5'
16220 3' -55.2 NC_004065.1 + 118720 0.67 0.941178
Target:  5'- gCCGAcGAGAuccuuGCCGGCGG-AgGUGUUg -3'
miRNA:   3'- aGGCUuUUCU-----UGGCCGCCcUgCGCAA- -5'
16220 3' -55.2 NC_004065.1 + 119002 0.71 0.79802
Target:  5'- -aUGAAGAGGGCCGcGUGguuGGACGCGUg -3'
miRNA:   3'- agGCUUUUCUUGGC-CGC---CCUGCGCAa -5'
16220 3' -55.2 NC_004065.1 + 119992 0.66 0.960739
Target:  5'- gCCGAgcgggugGAAGAACaCGGCGGG-CG-GUg -3'
miRNA:   3'- aGGCU-------UUUCUUG-GCCGCCCuGCgCAa -5'
16220 3' -55.2 NC_004065.1 + 120080 0.67 0.945602
Target:  5'- gCCGGAGAGGcgacucaugACCuccCGGGACGCGa- -3'
miRNA:   3'- aGGCUUUUCU---------UGGcc-GCCCUGCGCaa -5'
16220 3' -55.2 NC_004065.1 + 120545 0.67 0.941178
Target:  5'- cUCCGGu--GuGCCGGCGGcggucGGCGCGa- -3'
miRNA:   3'- -AGGCUuuuCuUGGCCGCC-----CUGCGCaa -5'
16220 3' -55.2 NC_004065.1 + 122224 0.66 0.967549
Target:  5'- gUCCucGAGcGGGCCGGCGGGuCGUu-- -3'
miRNA:   3'- -AGGcuUUU-CUUGGCCGCCCuGCGcaa -5'
16220 3' -55.2 NC_004065.1 + 122659 0.71 0.780153
Target:  5'- cCCGAGAAGAcgGgCGGCaGGGugGUGa- -3'
miRNA:   3'- aGGCUUUUCU--UgGCCG-CCCugCGCaa -5'
16220 3' -55.2 NC_004065.1 + 124350 0.67 0.95378
Target:  5'- gUCCGAGuAGAACCGGUggaagGGGAUcacCGUc -3'
miRNA:   3'- -AGGCUUuUCUUGGCCG-----CCCUGc--GCAa -5'
16220 3' -55.2 NC_004065.1 + 127228 0.67 0.945602
Target:  5'- gCCGcGAGGAuCgGGCGcGGugGCGg- -3'
miRNA:   3'- aGGCuUUUCUuGgCCGC-CCugCGCaa -5'
16220 3' -55.2 NC_004065.1 + 127473 0.74 0.663683
Target:  5'- cCCGggGAGGuggucggGCgCGGCGGGA-GCGUUg -3'
miRNA:   3'- aGGCuuUUCU-------UG-GCCGCCCUgCGCAA- -5'
16220 3' -55.2 NC_004065.1 + 128245 0.68 0.926543
Target:  5'- gUCCGAuguacuAAGAGCCGGaaGGACgaacucaaaaauGCGUUg -3'
miRNA:   3'- -AGGCUu-----UUCUUGGCCgcCCUG------------CGCAA- -5'
16220 3' -55.2 NC_004065.1 + 128387 0.66 0.973213
Target:  5'- -gCGgcGAGAGCCGGCugugGGGGCcgaGCGg- -3'
miRNA:   3'- agGCuuUUCUUGGCCG----CCCUG---CGCaa -5'
16220 3' -55.2 NC_004065.1 + 128437 0.67 0.936528
Target:  5'- aCCGAGucuGAGCgCGGCGgaggcguccgcGGGCGCGa- -3'
miRNA:   3'- aGGCUUuu-CUUG-GCCGC-----------CCUGCGCaa -5'
16220 3' -55.2 NC_004065.1 + 131013 0.67 0.945602
Target:  5'- aUCCGcgGAGAccAgCGGCGGaACGUGUg -3'
miRNA:   3'- -AGGCuuUUCU--UgGCCGCCcUGCGCAa -5'
16220 3' -55.2 NC_004065.1 + 135254 0.66 0.964419
Target:  5'- gUCCGAGGAGAuggaggACCGGCuGGccagguuCGCGc- -3'
miRNA:   3'- -AGGCUUUUCU------UGGCCGcCCu------GCGCaa -5'
16220 3' -55.2 NC_004065.1 + 136243 0.74 0.624666
Target:  5'- gCCGGAcAGGAACCGggaGCGGGGCGCu-- -3'
miRNA:   3'- aGGCUU-UUCUUGGC---CGCCCUGCGcaa -5'
16220 3' -55.2 NC_004065.1 + 139186 0.67 0.95378
Target:  5'- cCCGAucaucaucAAGGACUGuCGGGAUGCGg- -3'
miRNA:   3'- aGGCUu-------UUCUUGGCcGCCCUGCGCaa -5'
16220 3' -55.2 NC_004065.1 + 139478 0.67 0.941178
Target:  5'- gUUCGAGGGGGccguCgGGCGGGACGagaaGUa -3'
miRNA:   3'- -AGGCUUUUCUu---GgCCGCCCUGCg---CAa -5'
16220 3' -55.2 NC_004065.1 + 148864 0.7 0.831968
Target:  5'- aUCGAGGAGGcGgCGGCGGGGgGCGa- -3'
miRNA:   3'- aGGCUUUUCU-UgGCCGCCCUgCGCaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.