Results 61 - 79 of 79 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16220 | 3' | -55.2 | NC_004065.1 | + | 149894 | 0.69 | 0.883767 |
Target: 5'- cCCGAAcccGAGGguGCCGGUuggaugaGGGGCGCGc- -3' miRNA: 3'- aGGCUU---UUCU--UGGCCG-------CCCUGCGCaa -5' |
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16220 | 3' | -55.2 | NC_004065.1 | + | 162686 | 0.66 | 0.973213 |
Target: 5'- gUCCGGAgcGccauucGACCGGCGGGuaGCGa- -3' miRNA: 3'- -AGGCUUuuC------UUGGCCGCCCugCGCaa -5' |
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16220 | 3' | -55.2 | NC_004065.1 | + | 163629 | 0.67 | 0.941178 |
Target: 5'- cUCCGGAucGAG-CGGCGGcGGCgGCGg- -3' miRNA: 3'- -AGGCUUuuCUUgGCCGCC-CUG-CGCaa -5' |
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16220 | 3' | -55.2 | NC_004065.1 | + | 164551 | 0.68 | 0.915643 |
Target: 5'- gCUGuGucGAGCCGGCGGcGGCGCc-- -3' miRNA: 3'- aGGCuUuuCUUGGCCGCC-CUGCGcaa -5' |
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16220 | 3' | -55.2 | NC_004065.1 | + | 165653 | 0.66 | 0.973213 |
Target: 5'- cUCGGAcAGAGCCuGCGG-ACGCGa- -3' miRNA: 3'- aGGCUUuUCUUGGcCGCCcUGCGCaa -5' |
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16220 | 3' | -55.2 | NC_004065.1 | + | 167593 | 0.68 | 0.921207 |
Target: 5'- gUCUGAuguGGGuGCUGGCGGGGCuGuCGUUa -3' miRNA: 3'- -AGGCUu--UUCuUGGCCGCCCUG-C-GCAA- -5' |
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16220 | 3' | -55.2 | NC_004065.1 | + | 168640 | 0.67 | 0.949802 |
Target: 5'- -gCGGGcGGAGCCGGCGcGGCGaCGUc -3' miRNA: 3'- agGCUUuUCUUGGCCGCcCUGC-GCAa -5' |
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16220 | 3' | -55.2 | NC_004065.1 | + | 174411 | 0.7 | 0.840039 |
Target: 5'- -aCGAGAaAGAGCgGGaGGGACGCGg- -3' miRNA: 3'- agGCUUU-UCUUGgCCgCCCUGCGCaa -5' |
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16220 | 3' | -55.2 | NC_004065.1 | + | 176778 | 0.68 | 0.915643 |
Target: 5'- gUUCGAcacGAucgcGCCGGCGGaGCGCGUUg -3' miRNA: 3'- -AGGCUuuuCU----UGGCCGCCcUGCGCAA- -5' |
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16220 | 3' | -55.2 | NC_004065.1 | + | 184860 | 0.72 | 0.742963 |
Target: 5'- aUCGAGucGAGCgggCGGCGGGACGCc-- -3' miRNA: 3'- aGGCUUuuCUUG---GCCGCCCUGCGcaa -5' |
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16220 | 3' | -55.2 | NC_004065.1 | + | 206831 | 0.71 | 0.823724 |
Target: 5'- aUUCGGGcGGGAUCGGCGGGGC-CGa- -3' miRNA: 3'- -AGGCUUuUCUUGGCCGCCCUGcGCaa -5' |
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16220 | 3' | -55.2 | NC_004065.1 | + | 207820 | 1.05 | 0.009031 |
Target: 5'- aUCCGAAAAGAACCGGCGGGACGCGUUc -3' miRNA: 3'- -AGGCUUUUCUUGGCCGCCCUGCGCAA- -5' |
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16220 | 3' | -55.2 | NC_004065.1 | + | 208249 | 0.66 | 0.967549 |
Target: 5'- aCCGA--GGAGCCGaCGGaACGCGg- -3' miRNA: 3'- aGGCUuuUCUUGGCcGCCcUGCGCaa -5' |
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16220 | 3' | -55.2 | NC_004065.1 | + | 214210 | 0.69 | 0.891128 |
Target: 5'- aCCGggGuGAucauuuguagACgGGCGGGACGCu-- -3' miRNA: 3'- aGGCuuUuCU----------UGgCCGCCCUGCGcaa -5' |
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16220 | 3' | -55.2 | NC_004065.1 | + | 221996 | 0.66 | 0.970478 |
Target: 5'- cCCGAAGAcGAuACCGcGUGGGACuGCa-- -3' miRNA: 3'- aGGCUUUU-CU-UGGC-CGCCCUG-CGcaa -5' |
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16220 | 3' | -55.2 | NC_004065.1 | + | 222499 | 0.66 | 0.967549 |
Target: 5'- aUCgGAAaacuGAGGGCCaGGUcGGAUGCGUUg -3' miRNA: 3'- -AGgCUU----UUCUUGG-CCGcCCUGCGCAA- -5' |
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16220 | 3' | -55.2 | NC_004065.1 | + | 223893 | 0.72 | 0.761778 |
Target: 5'- -aCGAGuAGGAGCUGGCGGcGGCgGCGUg -3' miRNA: 3'- agGCUU-UUCUUGGCCGCC-CUG-CGCAa -5' |
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16220 | 3' | -55.2 | NC_004065.1 | + | 228946 | 0.68 | 0.93165 |
Target: 5'- uUCCGAGAAGucaGACCGaugaGCGGGAacggacaGCGa- -3' miRNA: 3'- -AGGCUUUUC---UUGGC----CGCCCUg------CGCaa -5' |
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16220 | 3' | -55.2 | NC_004065.1 | + | 229145 | 0.68 | 0.915643 |
Target: 5'- cCUGu--AGcauGCCGGCGGGGCGCc-- -3' miRNA: 3'- aGGCuuuUCu--UGGCCGCCCUGCGcaa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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