miRNA display CGI


Results 1 - 20 of 79 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16220 3' -55.2 NC_004065.1 + 229145 0.68 0.915643
Target:  5'- cCUGu--AGcauGCCGGCGGGGCGCc-- -3'
miRNA:   3'- aGGCuuuUCu--UGGCCGCCCUGCGcaa -5'
16220 3' -55.2 NC_004065.1 + 228946 0.68 0.93165
Target:  5'- uUCCGAGAAGucaGACCGaugaGCGGGAacggacaGCGa- -3'
miRNA:   3'- -AGGCUUUUC---UUGGC----CGCCCUg------CGCaa -5'
16220 3' -55.2 NC_004065.1 + 223893 0.72 0.761778
Target:  5'- -aCGAGuAGGAGCUGGCGGcGGCgGCGUg -3'
miRNA:   3'- agGCUU-UUCUUGGCCGCC-CUG-CGCAa -5'
16220 3' -55.2 NC_004065.1 + 222499 0.66 0.967549
Target:  5'- aUCgGAAaacuGAGGGCCaGGUcGGAUGCGUUg -3'
miRNA:   3'- -AGgCUU----UUCUUGG-CCGcCCUGCGCAA- -5'
16220 3' -55.2 NC_004065.1 + 221996 0.66 0.970478
Target:  5'- cCCGAAGAcGAuACCGcGUGGGACuGCa-- -3'
miRNA:   3'- aGGCUUUU-CU-UGGC-CGCCCUG-CGcaa -5'
16220 3' -55.2 NC_004065.1 + 214210 0.69 0.891128
Target:  5'- aCCGggGuGAucauuuguagACgGGCGGGACGCu-- -3'
miRNA:   3'- aGGCuuUuCU----------UGgCCGCCCUGCGcaa -5'
16220 3' -55.2 NC_004065.1 + 208249 0.66 0.967549
Target:  5'- aCCGA--GGAGCCGaCGGaACGCGg- -3'
miRNA:   3'- aGGCUuuUCUUGGCcGCCcUGCGCaa -5'
16220 3' -55.2 NC_004065.1 + 207820 1.05 0.009031
Target:  5'- aUCCGAAAAGAACCGGCGGGACGCGUUc -3'
miRNA:   3'- -AGGCUUUUCUUGGCCGCCCUGCGCAA- -5'
16220 3' -55.2 NC_004065.1 + 206831 0.71 0.823724
Target:  5'- aUUCGGGcGGGAUCGGCGGGGC-CGa- -3'
miRNA:   3'- -AGGCUUuUCUUGGCCGCCCUGcGCaa -5'
16220 3' -55.2 NC_004065.1 + 184860 0.72 0.742963
Target:  5'- aUCGAGucGAGCgggCGGCGGGACGCc-- -3'
miRNA:   3'- aGGCUUuuCUUG---GCCGCCCUGCGcaa -5'
16220 3' -55.2 NC_004065.1 + 176778 0.68 0.915643
Target:  5'- gUUCGAcacGAucgcGCCGGCGGaGCGCGUUg -3'
miRNA:   3'- -AGGCUuuuCU----UGGCCGCCcUGCGCAA- -5'
16220 3' -55.2 NC_004065.1 + 174411 0.7 0.840039
Target:  5'- -aCGAGAaAGAGCgGGaGGGACGCGg- -3'
miRNA:   3'- agGCUUU-UCUUGgCCgCCCUGCGCaa -5'
16220 3' -55.2 NC_004065.1 + 168640 0.67 0.949802
Target:  5'- -gCGGGcGGAGCCGGCGcGGCGaCGUc -3'
miRNA:   3'- agGCUUuUCUUGGCCGCcCUGC-GCAa -5'
16220 3' -55.2 NC_004065.1 + 167593 0.68 0.921207
Target:  5'- gUCUGAuguGGGuGCUGGCGGGGCuGuCGUUa -3'
miRNA:   3'- -AGGCUu--UUCuUGGCCGCCCUG-C-GCAA- -5'
16220 3' -55.2 NC_004065.1 + 165653 0.66 0.973213
Target:  5'- cUCGGAcAGAGCCuGCGG-ACGCGa- -3'
miRNA:   3'- aGGCUUuUCUUGGcCGCCcUGCGCaa -5'
16220 3' -55.2 NC_004065.1 + 164551 0.68 0.915643
Target:  5'- gCUGuGucGAGCCGGCGGcGGCGCc-- -3'
miRNA:   3'- aGGCuUuuCUUGGCCGCC-CUGCGcaa -5'
16220 3' -55.2 NC_004065.1 + 163629 0.67 0.941178
Target:  5'- cUCCGGAucGAG-CGGCGGcGGCgGCGg- -3'
miRNA:   3'- -AGGCUUuuCUUgGCCGCC-CUG-CGCaa -5'
16220 3' -55.2 NC_004065.1 + 162686 0.66 0.973213
Target:  5'- gUCCGGAgcGccauucGACCGGCGGGuaGCGa- -3'
miRNA:   3'- -AGGCUUuuC------UUGGCCGCCCugCGCaa -5'
16220 3' -55.2 NC_004065.1 + 149894 0.69 0.883767
Target:  5'- cCCGAAcccGAGGguGCCGGUuggaugaGGGGCGCGc- -3'
miRNA:   3'- aGGCUU---UUCU--UGGCCG-------CCCUGCGCaa -5'
16220 3' -55.2 NC_004065.1 + 148864 0.7 0.831968
Target:  5'- aUCGAGGAGGcGgCGGCGGGGgGCGa- -3'
miRNA:   3'- aGGCUUUUCU-UgGCCGCCCUgCGCaa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.