Results 61 - 79 of 79 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16220 | 3' | -55.2 | NC_004065.1 | + | 55398 | 0.69 | 0.882401 |
Target: 5'- cCCGAGcGGAcagaagACCGGCcugaugggcuguccGGGGCGCGg- -3' miRNA: 3'- aGGCUUuUCU------UGGCCG--------------CCCUGCGCaa -5' |
|||||||
16220 | 3' | -55.2 | NC_004065.1 | + | 50835 | 0.66 | 0.970478 |
Target: 5'- cCCGAAGAGAACgugaacGCcGGGCGCGg- -3' miRNA: 3'- aGGCUUUUCUUGgc----CGcCCUGCGCaa -5' |
|||||||
16220 | 3' | -55.2 | NC_004065.1 | + | 42228 | 0.76 | 0.555105 |
Target: 5'- --gGAGAGGGAUCGGCGGGggGCGCGa- -3' miRNA: 3'- aggCUUUUCUUGGCCGCCC--UGCGCaa -5' |
|||||||
16220 | 3' | -55.2 | NC_004065.1 | + | 38529 | 0.72 | 0.733412 |
Target: 5'- gCCGAGgcacGAGAACCuGGgGGGAcaCGCGUg -3' miRNA: 3'- aGGCUU----UUCUUGG-CCgCCCU--GCGCAa -5' |
|||||||
16220 | 3' | -55.2 | NC_004065.1 | + | 38213 | 0.72 | 0.771025 |
Target: 5'- cCCGugcGGAGGACgGGCGGGGUGUGUa -3' miRNA: 3'- aGGCu--UUUCUUGgCCGCCCUGCGCAa -5' |
|||||||
16220 | 3' | -55.2 | NC_004065.1 | + | 35564 | 0.69 | 0.877552 |
Target: 5'- cUCCGAGAAGGcgGCCacaGGCGgaaucGGugGCGUc -3' miRNA: 3'- -AGGCUUUUCU--UGG---CCGC-----CCugCGCAa -5' |
|||||||
16220 | 3' | -55.2 | NC_004065.1 | + | 34597 | 0.67 | 0.945602 |
Target: 5'- gUCCGAcgacGGcGACgCGGCGGGA-GCGUa -3' miRNA: 3'- -AGGCUuu--UC-UUG-GCCGCCCUgCGCAa -5' |
|||||||
16220 | 3' | -55.2 | NC_004065.1 | + | 34439 | 0.66 | 0.973213 |
Target: 5'- -aCGGAucGcacGGCCGG-GGGACGCGa- -3' miRNA: 3'- agGCUUuuC---UUGGCCgCCCUGCGCaa -5' |
|||||||
16220 | 3' | -55.2 | NC_004065.1 | + | 33648 | 0.66 | 0.973213 |
Target: 5'- cUCGuuGAcGAGCCGGCGGaGAUaGCGg- -3' miRNA: 3'- aGGCuuUU-CUUGGCCGCC-CUG-CGCaa -5' |
|||||||
16220 | 3' | -55.2 | NC_004065.1 | + | 33291 | 0.68 | 0.926543 |
Target: 5'- gCCGAuguuGGGGuaGGCGGcGACGCGa- -3' miRNA: 3'- aGGCUuu--UCUUggCCGCC-CUGCGCaa -5' |
|||||||
16220 | 3' | -55.2 | NC_004065.1 | + | 33281 | 0.66 | 0.973213 |
Target: 5'- gUCCGAuuacugccaGGAGAACa-GCGGG-CGCGa- -3' miRNA: 3'- -AGGCU---------UUUCUUGgcCGCCCuGCGCaa -5' |
|||||||
16220 | 3' | -55.2 | NC_004065.1 | + | 32839 | 0.7 | 0.840039 |
Target: 5'- gUCCGAGAAGGugaGCCGGUccaGCGCGUUg -3' miRNA: 3'- -AGGCUUUUCU---UGGCCGcccUGCGCAA- -5' |
|||||||
16220 | 3' | -55.2 | NC_004065.1 | + | 31731 | 0.68 | 0.90747 |
Target: 5'- cCCGAGuucaagcggugcuGGAACgCGGUGucGGACGCGUUg -3' miRNA: 3'- aGGCUUu------------UCUUG-GCCGC--CCUGCGCAA- -5' |
|||||||
16220 | 3' | -55.2 | NC_004065.1 | + | 28116 | 0.66 | 0.970478 |
Target: 5'- aCCGuugaaGAAAGAcCCGGUcuGGGACGCc-- -3' miRNA: 3'- aGGC-----UUUUCUuGGCCG--CCCUGCGcaa -5' |
|||||||
16220 | 3' | -55.2 | NC_004065.1 | + | 27276 | 0.74 | 0.664681 |
Target: 5'- -aCGAAGAG-ACCGGCGGcgccgccgacGACGCGUc -3' miRNA: 3'- agGCUUUUCuUGGCCGCC----------CUGCGCAa -5' |
|||||||
16220 | 3' | -55.2 | NC_004065.1 | + | 18168 | 0.66 | 0.973213 |
Target: 5'- aCCGuguGGAGcGCCGGcCGGGACuccCGUg -3' miRNA: 3'- aGGCu--UUUCuUGGCC-GCCCUGc--GCAa -5' |
|||||||
16220 | 3' | -55.2 | NC_004065.1 | + | 7315 | 0.67 | 0.957539 |
Target: 5'- cCUGAcgAucGAGCCGGUGguaccGGACGCGg- -3' miRNA: 3'- aGGCU--UuuCUUGGCCGC-----CCUGCGCaa -5' |
|||||||
16220 | 3' | -55.2 | NC_004065.1 | + | 1799 | 0.67 | 0.941178 |
Target: 5'- cCCGGucuGAACgCGGCGGcGAuCGCGg- -3' miRNA: 3'- aGGCUuuuCUUG-GCCGCC-CU-GCGCaa -5' |
|||||||
16220 | 3' | -55.2 | NC_004065.1 | + | 674 | 0.69 | 0.891128 |
Target: 5'- cCCGggGAGuAUUGGCGGGGCacccccccccGCGg- -3' miRNA: 3'- aGGCuuUUCuUGGCCGCCCUG----------CGCaa -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home