miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16220 3' -55.2 NC_004065.1 + 128245 0.68 0.926543
Target:  5'- gUCCGAuguacuAAGAGCCGGaaGGACgaacucaaaaauGCGUUg -3'
miRNA:   3'- -AGGCUu-----UUCUUGGCCgcCCUG------------CGCAA- -5'
16220 3' -55.2 NC_004065.1 + 55398 0.69 0.882401
Target:  5'- cCCGAGcGGAcagaagACCGGCcugaugggcuguccGGGGCGCGg- -3'
miRNA:   3'- aGGCUUuUCU------UGGCCG--------------CCCUGCGCaa -5'
16220 3' -55.2 NC_004065.1 + 149894 0.69 0.883767
Target:  5'- cCCGAAcccGAGGguGCCGGUuggaugaGGGGCGCGc- -3'
miRNA:   3'- aGGCUU---UUCU--UGGCCG-------CCCUGCGCaa -5'
16220 3' -55.2 NC_004065.1 + 674 0.69 0.891128
Target:  5'- cCCGggGAGuAUUGGCGGGGCacccccccccGCGg- -3'
miRNA:   3'- aGGCuuUUCuUGGCCGCCCUG----------CGCaa -5'
16220 3' -55.2 NC_004065.1 + 214210 0.69 0.891128
Target:  5'- aCCGggGuGAucauuuguagACgGGCGGGACGCu-- -3'
miRNA:   3'- aGGCuuUuCU----------UGgCCGCCCUGCGcaa -5'
16220 3' -55.2 NC_004065.1 + 164551 0.68 0.915643
Target:  5'- gCUGuGucGAGCCGGCGGcGGCGCc-- -3'
miRNA:   3'- aGGCuUuuCUUGGCCGCC-CUGCGcaa -5'
16220 3' -55.2 NC_004065.1 + 229145 0.68 0.915643
Target:  5'- cCUGu--AGcauGCCGGCGGGGCGCc-- -3'
miRNA:   3'- aGGCuuuUCu--UGGCCGCCCUGCGcaa -5'
16220 3' -55.2 NC_004065.1 + 167593 0.68 0.921207
Target:  5'- gUCUGAuguGGGuGCUGGCGGGGCuGuCGUUa -3'
miRNA:   3'- -AGGCUu--UUCuUGGCCGCCCUG-C-GCAA- -5'
16220 3' -55.2 NC_004065.1 + 33291 0.68 0.926543
Target:  5'- gCCGAuguuGGGGuaGGCGGcGACGCGa- -3'
miRNA:   3'- aGGCUuu--UCUUggCCGCC-CUGCGCaa -5'
16220 3' -55.2 NC_004065.1 + 35564 0.69 0.877552
Target:  5'- cUCCGAGAAGGcgGCCacaGGCGgaaucGGugGCGUc -3'
miRNA:   3'- -AGGCUUUUCU--UGG---CCGC-----CCugCGCAa -5'
16220 3' -55.2 NC_004065.1 + 174411 0.7 0.840039
Target:  5'- -aCGAGAaAGAGCgGGaGGGACGCGg- -3'
miRNA:   3'- agGCUUU-UCUUGgCCgCCCUGCGCaa -5'
16220 3' -55.2 NC_004065.1 + 106930 0.7 0.840039
Target:  5'- gUCCGuguuGAcauUCGGCGGGAUGCGa- -3'
miRNA:   3'- -AGGCuuuuCUu--GGCCGCCCUGCGCaa -5'
16220 3' -55.2 NC_004065.1 + 27276 0.74 0.664681
Target:  5'- -aCGAAGAG-ACCGGCGGcgccgccgacGACGCGUc -3'
miRNA:   3'- agGCUUUUCuUGGCCGCC----------CUGCGCAa -5'
16220 3' -55.2 NC_004065.1 + 64893 0.73 0.704289
Target:  5'- gUCgGAGAAGAgcggcgccagucGCCgGGCGGGACGCc-- -3'
miRNA:   3'- -AGgCUUUUCU------------UGG-CCGCCCUGCGcaa -5'
16220 3' -55.2 NC_004065.1 + 184860 0.72 0.742963
Target:  5'- aUCGAGucGAGCgggCGGCGGGACGCc-- -3'
miRNA:   3'- aGGCUUuuCUUG---GCCGCCCUGCGcaa -5'
16220 3' -55.2 NC_004065.1 + 38213 0.72 0.771025
Target:  5'- cCCGugcGGAGGACgGGCGGGGUGUGUa -3'
miRNA:   3'- aGGCu--UUUCUUGgCCGCCCUGCGCAa -5'
16220 3' -55.2 NC_004065.1 + 122659 0.71 0.780153
Target:  5'- cCCGAGAAGAcgGgCGGCaGGGugGUGa- -3'
miRNA:   3'- aGGCUUUUCU--UgGCCG-CCCugCGCaa -5'
16220 3' -55.2 NC_004065.1 + 119002 0.71 0.79802
Target:  5'- -aUGAAGAGGGCCGcGUGguuGGACGCGUg -3'
miRNA:   3'- agGCUUUUCUUGGC-CGC---CCUGCGCAa -5'
16220 3' -55.2 NC_004065.1 + 83229 0.71 0.806742
Target:  5'- gCCGGGAGGAGCauacugcaCGGCggucuGGGugGCGUa -3'
miRNA:   3'- aGGCUUUUCUUG--------GCCG-----CCCugCGCAa -5'
16220 3' -55.2 NC_004065.1 + 32839 0.7 0.840039
Target:  5'- gUCCGAGAAGGugaGCCGGUccaGCGCGUUg -3'
miRNA:   3'- -AGGCUUUUCU---UGGCCGcccUGCGCAA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.