Results 41 - 60 of 79 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16220 | 3' | -55.2 | NC_004065.1 | + | 128245 | 0.68 | 0.926543 |
Target: 5'- gUCCGAuguacuAAGAGCCGGaaGGACgaacucaaaaauGCGUUg -3' miRNA: 3'- -AGGCUu-----UUCUUGGCCgcCCUG------------CGCAA- -5' |
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16220 | 3' | -55.2 | NC_004065.1 | + | 33291 | 0.68 | 0.926543 |
Target: 5'- gCCGAuguuGGGGuaGGCGGcGACGCGa- -3' miRNA: 3'- aGGCUuu--UCUUggCCGCC-CUGCGCaa -5' |
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16220 | 3' | -55.2 | NC_004065.1 | + | 167593 | 0.68 | 0.921207 |
Target: 5'- gUCUGAuguGGGuGCUGGCGGGGCuGuCGUUa -3' miRNA: 3'- -AGGCUu--UUCuUGGCCGCCCUG-C-GCAA- -5' |
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16220 | 3' | -55.2 | NC_004065.1 | + | 229145 | 0.68 | 0.915643 |
Target: 5'- cCUGu--AGcauGCCGGCGGGGCGCc-- -3' miRNA: 3'- aGGCuuuUCu--UGGCCGCCCUGCGcaa -5' |
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16220 | 3' | -55.2 | NC_004065.1 | + | 164551 | 0.68 | 0.915643 |
Target: 5'- gCUGuGucGAGCCGGCGGcGGCGCc-- -3' miRNA: 3'- aGGCuUuuCUUGGCCGCC-CUGCGcaa -5' |
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16220 | 3' | -55.2 | NC_004065.1 | + | 214210 | 0.69 | 0.891128 |
Target: 5'- aCCGggGuGAucauuuguagACgGGCGGGACGCu-- -3' miRNA: 3'- aGGCuuUuCU----------UGgCCGCCCUGCGcaa -5' |
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16220 | 3' | -55.2 | NC_004065.1 | + | 674 | 0.69 | 0.891128 |
Target: 5'- cCCGggGAGuAUUGGCGGGGCacccccccccGCGg- -3' miRNA: 3'- aGGCuuUUCuUGGCCGCCCUG----------CGCaa -5' |
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16220 | 3' | -55.2 | NC_004065.1 | + | 149894 | 0.69 | 0.883767 |
Target: 5'- cCCGAAcccGAGGguGCCGGUuggaugaGGGGCGCGc- -3' miRNA: 3'- aGGCUU---UUCU--UGGCCG-------CCCUGCGCaa -5' |
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16220 | 3' | -55.2 | NC_004065.1 | + | 94730 | 0.71 | 0.806742 |
Target: 5'- gCCGAAGuc-GgCGGCGGaGACGCGUUu -3' miRNA: 3'- aGGCUUUucuUgGCCGCC-CUGCGCAA- -5' |
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16220 | 3' | -55.2 | NC_004065.1 | + | 206831 | 0.71 | 0.823724 |
Target: 5'- aUUCGGGcGGGAUCGGCGGGGC-CGa- -3' miRNA: 3'- -AGGCUUuUCUUGGCCGCCCUGcGCaa -5' |
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16220 | 3' | -55.2 | NC_004065.1 | + | 93233 | 0.7 | 0.831968 |
Target: 5'- gCCGAcGAAGcGGCCGGUGGGAuCGaCGUg -3' miRNA: 3'- aGGCU-UUUC-UUGGCCGCCCU-GC-GCAa -5' |
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16220 | 3' | -55.2 | NC_004065.1 | + | 148864 | 0.7 | 0.831968 |
Target: 5'- aUCGAGGAGGcGgCGGCGGGGgGCGa- -3' miRNA: 3'- aGGCUUUUCU-UgGCCGCCCUgCGCaa -5' |
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16220 | 3' | -55.2 | NC_004065.1 | + | 65314 | 0.7 | 0.863139 |
Target: 5'- cCCGcgugguGGGACCGGCGGcGGCgGCGg- -3' miRNA: 3'- aGGCuuu---UCUUGGCCGCC-CUG-CGCaa -5' |
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16220 | 3' | -55.2 | NC_004065.1 | + | 80312 | 0.71 | 0.789154 |
Target: 5'- gUCCGA---GGGCCGGCGcGGcCGCGg- -3' miRNA: 3'- -AGGCUuuuCUUGGCCGC-CCuGCGCaa -5' |
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16220 | 3' | -55.2 | NC_004065.1 | + | 223893 | 0.72 | 0.761778 |
Target: 5'- -aCGAGuAGGAGCUGGCGGcGGCgGCGUg -3' miRNA: 3'- agGCUU-UUCUUGGCCGCC-CUG-CGCAa -5' |
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16220 | 3' | -55.2 | NC_004065.1 | + | 38529 | 0.72 | 0.733412 |
Target: 5'- gCCGAGgcacGAGAACCuGGgGGGAcaCGCGUg -3' miRNA: 3'- aGGCUU----UUCUUGG-CCgCCCU--GCGCAa -5' |
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16220 | 3' | -55.2 | NC_004065.1 | + | 127473 | 0.74 | 0.663683 |
Target: 5'- cCCGggGAGGuggucggGCgCGGCGGGA-GCGUUg -3' miRNA: 3'- aGGCuuUUCU-------UG-GCCGCCCUgCGCAA- -5' |
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16220 | 3' | -55.2 | NC_004065.1 | + | 136243 | 0.74 | 0.624666 |
Target: 5'- gCCGGAcAGGAACCGggaGCGGGGCGCu-- -3' miRNA: 3'- aGGCUU-UUCUUGGC---CGCCCUGCGcaa -5' |
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16220 | 3' | -55.2 | NC_004065.1 | + | 42228 | 0.76 | 0.555105 |
Target: 5'- --gGAGAGGGAUCGGCGGGggGCGCGa- -3' miRNA: 3'- aggCUUUUCUUGGCCGCCC--UGCGCaa -5' |
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16220 | 3' | -55.2 | NC_004065.1 | + | 34439 | 0.66 | 0.973213 |
Target: 5'- -aCGGAucGcacGGCCGG-GGGACGCGa- -3' miRNA: 3'- agGCUUuuC---UUGGCCgCCCUGCGCaa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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