miRNA display CGI


Results 21 - 40 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16220 3' -55.2 NC_004065.1 + 127473 0.74 0.663683
Target:  5'- cCCGggGAGGuggucggGCgCGGCGGGA-GCGUUg -3'
miRNA:   3'- aGGCuuUUCU-------UG-GCCGCCCUgCGCAA- -5'
16220 3' -55.2 NC_004065.1 + 62002 0.66 0.970478
Target:  5'- cCCGcGAAcacAGAACCGGCccgaGACGCGUc -3'
miRNA:   3'- aGGC-UUU---UCUUGGCCGcc--CUGCGCAa -5'
16220 3' -55.2 NC_004065.1 + 139478 0.67 0.941178
Target:  5'- gUUCGAGGGGGccguCgGGCGGGACGagaaGUa -3'
miRNA:   3'- -AGGCUUUUCUu---GgCCGCCCUGCg---CAa -5'
16220 3' -55.2 NC_004065.1 + 136243 0.74 0.624666
Target:  5'- gCCGGAcAGGAACCGggaGCGGGGCGCu-- -3'
miRNA:   3'- aGGCUU-UUCUUGGC---CGCCCUGCGcaa -5'
16220 3' -55.2 NC_004065.1 + 7315 0.67 0.957539
Target:  5'- cCUGAcgAucGAGCCGGUGguaccGGACGCGg- -3'
miRNA:   3'- aGGCU--UuuCUUGGCCGC-----CCUGCGCaa -5'
16220 3' -55.2 NC_004065.1 + 18168 0.66 0.973213
Target:  5'- aCCGuguGGAGcGCCGGcCGGGACuccCGUg -3'
miRNA:   3'- aGGCu--UUUCuUGGCC-GCCCUGc--GCAa -5'
16220 3' -55.2 NC_004065.1 + 28116 0.66 0.970478
Target:  5'- aCCGuugaaGAAAGAcCCGGUcuGGGACGCc-- -3'
miRNA:   3'- aGGC-----UUUUCUuGGCCG--CCCUGCGcaa -5'
16220 3' -55.2 NC_004065.1 + 42228 0.76 0.555105
Target:  5'- --gGAGAGGGAUCGGCGGGggGCGCGa- -3'
miRNA:   3'- aggCUUUUCUUGGCCGCCC--UGCGCaa -5'
16220 3' -55.2 NC_004065.1 + 78049 0.76 0.516332
Target:  5'- cCUGAuGAG-GCCGGCGGGGCGCa-- -3'
miRNA:   3'- aGGCUuUUCuUGGCCGCCCUGCGcaa -5'
16220 3' -55.2 NC_004065.1 + 38529 0.72 0.733412
Target:  5'- gCCGAGgcacGAGAACCuGGgGGGAcaCGCGUg -3'
miRNA:   3'- aGGCUU----UUCUUGG-CCgCCCU--GCGCAa -5'
16220 3' -55.2 NC_004065.1 + 148864 0.7 0.831968
Target:  5'- aUCGAGGAGGcGgCGGCGGGGgGCGa- -3'
miRNA:   3'- aGGCUUUUCU-UgGCCGCCCUgCGCaa -5'
16220 3' -55.2 NC_004065.1 + 119002 0.71 0.79802
Target:  5'- -aUGAAGAGGGCCGcGUGguuGGACGCGUg -3'
miRNA:   3'- agGCUUUUCUUGGC-CGC---CCUGCGCAa -5'
16220 3' -55.2 NC_004065.1 + 139186 0.67 0.95378
Target:  5'- cCCGAucaucaucAAGGACUGuCGGGAUGCGg- -3'
miRNA:   3'- aGGCUu-------UUCUUGGCcGCCCUGCGCaa -5'
16220 3' -55.2 NC_004065.1 + 65546 0.67 0.95378
Target:  5'- gCUGAcgcuGGGcgcgucGCCGGCGGGuCGCGa- -3'
miRNA:   3'- aGGCUuu--UCU------UGGCCGCCCuGCGCaa -5'
16220 3' -55.2 NC_004065.1 + 168640 0.67 0.949802
Target:  5'- -gCGGGcGGAGCCGGCGcGGCGaCGUc -3'
miRNA:   3'- agGCUUuUCUUGGCCGCcCUGC-GCAa -5'
16220 3' -55.2 NC_004065.1 + 127228 0.67 0.945602
Target:  5'- gCCGcGAGGAuCgGGCGcGGugGCGg- -3'
miRNA:   3'- aGGCuUUUCUuGgCCGC-CCugCGCaa -5'
16220 3' -55.2 NC_004065.1 + 1799 0.67 0.941178
Target:  5'- cCCGGucuGAACgCGGCGGcGAuCGCGg- -3'
miRNA:   3'- aGGCUuuuCUUG-GCCGCC-CU-GCGCaa -5'
16220 3' -55.2 NC_004065.1 + 55398 0.69 0.882401
Target:  5'- cCCGAGcGGAcagaagACCGGCcugaugggcuguccGGGGCGCGg- -3'
miRNA:   3'- aGGCUUuUCU------UGGCCG--------------CCCUGCGCaa -5'
16220 3' -55.2 NC_004065.1 + 149894 0.69 0.883767
Target:  5'- cCCGAAcccGAGGguGCCGGUuggaugaGGGGCGCGc- -3'
miRNA:   3'- aGGCUU---UUCU--UGGCCG-------CCCUGCGCaa -5'
16220 3' -55.2 NC_004065.1 + 674 0.69 0.891128
Target:  5'- cCCGggGAGuAUUGGCGGGGCacccccccccGCGg- -3'
miRNA:   3'- aGGCuuUUCuUGGCCGCCCUG----------CGCaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.