miRNA display CGI


Results 41 - 60 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16220 3' -55.2 NC_004065.1 + 122659 0.71 0.780153
Target:  5'- cCCGAGAAGAcgGgCGGCaGGGugGUGa- -3'
miRNA:   3'- aGGCUUUUCU--UgGCCG-CCCugCGCaa -5'
16220 3' -55.2 NC_004065.1 + 64893 0.73 0.704289
Target:  5'- gUCgGAGAAGAgcggcgccagucGCCgGGCGGGACGCc-- -3'
miRNA:   3'- -AGgCUUUUCU------------UGG-CCGCCCUGCGcaa -5'
16220 3' -55.2 NC_004065.1 + 221996 0.66 0.970478
Target:  5'- cCCGAAGAcGAuACCGcGUGGGACuGCa-- -3'
miRNA:   3'- aGGCUUUU-CU-UGGC-CGCCCUG-CGcaa -5'
16220 3' -55.2 NC_004065.1 + 50835 0.66 0.970478
Target:  5'- cCCGAAGAGAACgugaacGCcGGGCGCGg- -3'
miRNA:   3'- aGGCUUUUCUUGgc----CGcCCUGCGCaa -5'
16220 3' -55.2 NC_004065.1 + 128437 0.67 0.936528
Target:  5'- aCCGAGucuGAGCgCGGCGgaggcguccgcGGGCGCGa- -3'
miRNA:   3'- aGGCUUuu-CUUG-GCCGC-----------CCUGCGCaa -5'
16220 3' -55.2 NC_004065.1 + 128245 0.68 0.926543
Target:  5'- gUCCGAuguacuAAGAGCCGGaaGGACgaacucaaaaauGCGUUg -3'
miRNA:   3'- -AGGCUu-----UUCUUGGCCgcCCUG------------CGCAA- -5'
16220 3' -55.2 NC_004065.1 + 163629 0.67 0.941178
Target:  5'- cUCCGGAucGAG-CGGCGGcGGCgGCGg- -3'
miRNA:   3'- -AGGCUUuuCUUgGCCGCC-CUG-CGCaa -5'
16220 3' -55.2 NC_004065.1 + 1799 0.67 0.941178
Target:  5'- cCCGGucuGAACgCGGCGGcGAuCGCGg- -3'
miRNA:   3'- aGGCUuuuCUUG-GCCGCC-CU-GCGCaa -5'
16220 3' -55.2 NC_004065.1 + 127228 0.67 0.945602
Target:  5'- gCCGcGAGGAuCgGGCGcGGugGCGg- -3'
miRNA:   3'- aGGCuUUUCUuGgCCGC-CCugCGCaa -5'
16220 3' -55.2 NC_004065.1 + 168640 0.67 0.949802
Target:  5'- -gCGGGcGGAGCCGGCGcGGCGaCGUc -3'
miRNA:   3'- agGCUUuUCUUGGCCGCcCUGC-GCAa -5'
16220 3' -55.2 NC_004065.1 + 65546 0.67 0.95378
Target:  5'- gCUGAcgcuGGGcgcgucGCCGGCGGGuCGCGa- -3'
miRNA:   3'- aGGCUuu--UCU------UGGCCGCCCuGCGCaa -5'
16220 3' -55.2 NC_004065.1 + 139186 0.67 0.95378
Target:  5'- cCCGAucaucaucAAGGACUGuCGGGAUGCGg- -3'
miRNA:   3'- aGGCUu-------UUCUUGGCcGCCCUGCGCaa -5'
16220 3' -55.2 NC_004065.1 + 33291 0.68 0.926543
Target:  5'- gCCGAuguuGGGGuaGGCGGcGACGCGa- -3'
miRNA:   3'- aGGCUuu--UCUUggCCGCC-CUGCGCaa -5'
16220 3' -55.2 NC_004065.1 + 674 0.69 0.891128
Target:  5'- cCCGggGAGuAUUGGCGGGGCacccccccccGCGg- -3'
miRNA:   3'- aGGCuuUUCuUGGCCGCCCUG----------CGCaa -5'
16220 3' -55.2 NC_004065.1 + 149894 0.69 0.883767
Target:  5'- cCCGAAcccGAGGguGCCGGUuggaugaGGGGCGCGc- -3'
miRNA:   3'- aGGCUU---UUCU--UGGCCG-------CCCUGCGCaa -5'
16220 3' -55.2 NC_004065.1 + 120545 0.67 0.941178
Target:  5'- cUCCGGu--GuGCCGGCGGcggucGGCGCGa- -3'
miRNA:   3'- -AGGCUuuuCuUGGCCGCC-----CUGCGCaa -5'
16220 3' -55.2 NC_004065.1 + 55398 0.69 0.882401
Target:  5'- cCCGAGcGGAcagaagACCGGCcugaugggcuguccGGGGCGCGg- -3'
miRNA:   3'- aGGCUUuUCU------UGGCCG--------------CCCUGCGCaa -5'
16220 3' -55.2 NC_004065.1 + 60553 0.66 0.970194
Target:  5'- gCCGGAgacgacgGAGAcgccggguccgcACaCGGCGGGGCGCc-- -3'
miRNA:   3'- aGGCUU-------UUCU------------UG-GCCGCCCUGCGcaa -5'
16220 3' -55.2 NC_004065.1 + 98135 0.66 0.970478
Target:  5'- gUCCGGAGAGGuCUGGCGGuGAuaguCGCc-- -3'
miRNA:   3'- -AGGCUUUUCUuGGCCGCC-CU----GCGcaa -5'
16220 3' -55.2 NC_004065.1 + 114843 0.66 0.970478
Target:  5'- cUCCGgcAGGAAgaGGagacguCGGGGCGCGg- -3'
miRNA:   3'- -AGGCuuUUCUUggCC------GCCCUGCGCaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.