Results 61 - 79 of 79 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16220 | 3' | -55.2 | NC_004065.1 | + | 128245 | 0.68 | 0.926543 |
Target: 5'- gUCCGAuguacuAAGAGCCGGaaGGACgaacucaaaaauGCGUUg -3' miRNA: 3'- -AGGCUu-----UUCUUGGCCgcCCUG------------CGCAA- -5' |
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16220 | 3' | -55.2 | NC_004065.1 | + | 222499 | 0.66 | 0.967549 |
Target: 5'- aUCgGAAaacuGAGGGCCaGGUcGGAUGCGUUg -3' miRNA: 3'- -AGgCUU----UUCUUGG-CCGcCCUGCGCAA- -5' |
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16220 | 3' | -55.2 | NC_004065.1 | + | 208249 | 0.66 | 0.967549 |
Target: 5'- aCCGA--GGAGCCGaCGGaACGCGg- -3' miRNA: 3'- aGGCUuuUCUUGGCcGCCcUGCGCaa -5' |
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16220 | 3' | -55.2 | NC_004065.1 | + | 122224 | 0.66 | 0.967549 |
Target: 5'- gUCCucGAGcGGGCCGGCGGGuCGUu-- -3' miRNA: 3'- -AGGcuUUU-CUUGGCCGCCCuGCGcaa -5' |
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16220 | 3' | -55.2 | NC_004065.1 | + | 135254 | 0.66 | 0.964419 |
Target: 5'- gUCCGAGGAGAuggaggACCGGCuGGccagguuCGCGc- -3' miRNA: 3'- -AGGCUUUUCU------UGGCCGcCCu------GCGCaa -5' |
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16220 | 3' | -55.2 | NC_004065.1 | + | 75795 | 0.66 | 0.961084 |
Target: 5'- -gCGAGGGGGAgCGGCGGcGAgGCa-- -3' miRNA: 3'- agGCUUUUCUUgGCCGCC-CUgCGcaa -5' |
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16220 | 3' | -55.2 | NC_004065.1 | + | 119992 | 0.66 | 0.960739 |
Target: 5'- gCCGAgcgggugGAAGAACaCGGCGGG-CG-GUg -3' miRNA: 3'- aGGCU-------UUUCUUG-GCCGCCCuGCgCAa -5' |
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16220 | 3' | -55.2 | NC_004065.1 | + | 59192 | 0.67 | 0.957539 |
Target: 5'- -gCGAAAAcGAACCa-CGGGAUGCGUc -3' miRNA: 3'- agGCUUUU-CUUGGccGCCCUGCGCAa -5' |
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16220 | 3' | -55.2 | NC_004065.1 | + | 124350 | 0.67 | 0.95378 |
Target: 5'- gUCCGAGuAGAACCGGUggaagGGGAUcacCGUc -3' miRNA: 3'- -AGGCUUuUCUUGGCCG-----CCCUGc--GCAa -5' |
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16220 | 3' | -55.2 | NC_004065.1 | + | 139186 | 0.67 | 0.95378 |
Target: 5'- cCCGAucaucaucAAGGACUGuCGGGAUGCGg- -3' miRNA: 3'- aGGCUu-------UUCUUGGCcGCCCUGCGCaa -5' |
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16220 | 3' | -55.2 | NC_004065.1 | + | 65546 | 0.67 | 0.95378 |
Target: 5'- gCUGAcgcuGGGcgcgucGCCGGCGGGuCGCGa- -3' miRNA: 3'- aGGCUuu--UCU------UGGCCGCCCuGCGCaa -5' |
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16220 | 3' | -55.2 | NC_004065.1 | + | 168640 | 0.67 | 0.949802 |
Target: 5'- -gCGGGcGGAGCCGGCGcGGCGaCGUc -3' miRNA: 3'- agGCUUuUCUUGGCCGCcCUGC-GCAa -5' |
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16220 | 3' | -55.2 | NC_004065.1 | + | 127228 | 0.67 | 0.945602 |
Target: 5'- gCCGcGAGGAuCgGGCGcGGugGCGg- -3' miRNA: 3'- aGGCuUUUCUuGgCCGC-CCugCGCaa -5' |
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16220 | 3' | -55.2 | NC_004065.1 | + | 1799 | 0.67 | 0.941178 |
Target: 5'- cCCGGucuGAACgCGGCGGcGAuCGCGg- -3' miRNA: 3'- aGGCUuuuCUUG-GCCGCC-CU-GCGCaa -5' |
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16220 | 3' | -55.2 | NC_004065.1 | + | 163629 | 0.67 | 0.941178 |
Target: 5'- cUCCGGAucGAG-CGGCGGcGGCgGCGg- -3' miRNA: 3'- -AGGCUUuuCUUgGCCGCC-CUG-CGCaa -5' |
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16220 | 3' | -55.2 | NC_004065.1 | + | 120545 | 0.67 | 0.941178 |
Target: 5'- cUCCGGu--GuGCCGGCGGcggucGGCGCGa- -3' miRNA: 3'- -AGGCUuuuCuUGGCCGCC-----CUGCGCaa -5' |
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16220 | 3' | -55.2 | NC_004065.1 | + | 128437 | 0.67 | 0.936528 |
Target: 5'- aCCGAGucuGAGCgCGGCGgaggcguccgcGGGCGCGa- -3' miRNA: 3'- aGGCUUuu-CUUG-GCCGC-----------CCUGCGCaa -5' |
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16220 | 3' | -55.2 | NC_004065.1 | + | 228946 | 0.68 | 0.93165 |
Target: 5'- uUCCGAGAAGucaGACCGaugaGCGGGAacggacaGCGa- -3' miRNA: 3'- -AGGCUUUUC---UUGGC----CGCCCUg------CGCaa -5' |
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16220 | 3' | -55.2 | NC_004065.1 | + | 207820 | 1.05 | 0.009031 |
Target: 5'- aUCCGAAAAGAACCGGCGGGACGCGUUc -3' miRNA: 3'- -AGGCUUUUCUUGGCCGCCCUGCGCAA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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