miRNA display CGI


Results 1 - 20 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16220 5' -58.2 NC_004065.1 + 222583 0.66 0.920744
Target:  5'- aGGUCUCcucGCCCGCUGCCacgaUgGCCu -3'
miRNA:   3'- gCUAGAGu--UGGGUGGCGGgg--AgUGGc -5'
16220 5' -58.2 NC_004065.1 + 50338 0.66 0.920744
Target:  5'- aGAUCUgcaacagcggCAGCUucuucuggCACUGCUCCUCGCCc -3'
miRNA:   3'- gCUAGA----------GUUGG--------GUGGCGGGGAGUGGc -5'
16220 5' -58.2 NC_004065.1 + 168863 0.66 0.920744
Target:  5'- gCGGUUcCAACCCgaucuucgacGCCGUUUCUUACCGc -3'
miRNA:   3'- -GCUAGaGUUGGG----------UGGCGGGGAGUGGC- -5'
16220 5' -58.2 NC_004065.1 + 94890 0.66 0.920744
Target:  5'- -cGUCgUCAucACCCGCCGCgCC-CGCCc -3'
miRNA:   3'- gcUAG-AGU--UGGGUGGCGgGGaGUGGc -5'
16220 5' -58.2 NC_004065.1 + 105039 0.66 0.920744
Target:  5'- gCGcgCUgcaCGACCCG-CGCCUCUgGCCGc -3'
miRNA:   3'- -GCuaGA---GUUGGGUgGCGGGGAgUGGC- -5'
16220 5' -58.2 NC_004065.1 + 200304 0.66 0.920744
Target:  5'- gGAUCUCAucguCCUgggcggcguCCGCCgCUCgACCGg -3'
miRNA:   3'- gCUAGAGUu---GGGu--------GGCGGgGAG-UGGC- -5'
16220 5' -58.2 NC_004065.1 + 99291 0.66 0.920744
Target:  5'- -cGUC-CGAuCCCACCGCCCuCUCcuCCu -3'
miRNA:   3'- gcUAGaGUU-GGGUGGCGGG-GAGu-GGc -5'
16220 5' -58.2 NC_004065.1 + 90105 0.66 0.920744
Target:  5'- aCGAagUUCAACCCGCUGgCgC-CGCCGg -3'
miRNA:   3'- -GCUa-GAGUUGGGUGGCgGgGaGUGGC- -5'
16220 5' -58.2 NC_004065.1 + 96616 0.66 0.915323
Target:  5'- aGAUCUgAcCCCuuCGUCCUcgUCGCCGg -3'
miRNA:   3'- gCUAGAgUuGGGugGCGGGG--AGUGGC- -5'
16220 5' -58.2 NC_004065.1 + 178231 0.66 0.915323
Target:  5'- gCGuGUCUCA-UCCACUGCCuuCCUCACa- -3'
miRNA:   3'- -GC-UAGAGUuGGGUGGCGG--GGAGUGgc -5'
16220 5' -58.2 NC_004065.1 + 113864 0.66 0.915323
Target:  5'- gGAUCcgaGACCUACCgacccgGCCCCgagcCGCCGc -3'
miRNA:   3'- gCUAGag-UUGGGUGG------CGGGGa---GUGGC- -5'
16220 5' -58.2 NC_004065.1 + 91022 0.66 0.915323
Target:  5'- gCGGUC-CAuggCCACCGUCCCgagcucguagCACCGc -3'
miRNA:   3'- -GCUAGaGUug-GGUGGCGGGGa---------GUGGC- -5'
16220 5' -58.2 NC_004065.1 + 126311 0.66 0.915323
Target:  5'- aCGAUCac-GCCCGCCaggcGCUCCcCGCCGc -3'
miRNA:   3'- -GCUAGaguUGGGUGG----CGGGGaGUGGC- -5'
16220 5' -58.2 NC_004065.1 + 162346 0.66 0.915323
Target:  5'- aGAUggagGGCCCGCCGCCgCCgcCGCCGc -3'
miRNA:   3'- gCUAgag-UUGGGUGGCGG-GGa-GUGGC- -5'
16220 5' -58.2 NC_004065.1 + 182687 0.66 0.915323
Target:  5'- --cUCUCAuguuggccAUCCGuuGCCCCcCGCCGc -3'
miRNA:   3'- gcuAGAGU--------UGGGUggCGGGGaGUGGC- -5'
16220 5' -58.2 NC_004065.1 + 161508 0.66 0.913093
Target:  5'- ---cCUCGGCCUccgggagaugcguCCGCCgCCUCACCu -3'
miRNA:   3'- gcuaGAGUUGGGu------------GGCGG-GGAGUGGc -5'
16220 5' -58.2 NC_004065.1 + 88132 0.66 0.911966
Target:  5'- uGAUUUCAACgaGCuuuaauagaaaggggCGCCCgCUCGCCGg -3'
miRNA:   3'- gCUAGAGUUGggUG---------------GCGGG-GAGUGGC- -5'
16220 5' -58.2 NC_004065.1 + 93696 0.66 0.909686
Target:  5'- cCGAaCU-GACCCACCgGCUCCUUAUUGa -3'
miRNA:   3'- -GCUaGAgUUGGGUGG-CGGGGAGUGGC- -5'
16220 5' -58.2 NC_004065.1 + 159907 0.66 0.909686
Target:  5'- uCGAUCg--GCgCCGCCGCCgCCgcuGCCGg -3'
miRNA:   3'- -GCUAGaguUG-GGUGGCGG-GGag-UGGC- -5'
16220 5' -58.2 NC_004065.1 + 179335 0.66 0.909686
Target:  5'- aGAUCagcaggagCAGCCCAUgGa-CCUCACCGu -3'
miRNA:   3'- gCUAGa-------GUUGGGUGgCggGGAGUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.