miRNA display CGI


Results 1 - 20 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16220 5' -58.2 NC_004065.1 + 161508 0.66 0.913093
Target:  5'- ---cCUCGGCCUccgggagaugcguCCGCCgCCUCACCu -3'
miRNA:   3'- gcuaGAGUUGGGu------------GGCGG-GGAGUGGc -5'
16220 5' -58.2 NC_004065.1 + 161981 0.66 0.903836
Target:  5'- uGAUCUCucGCUUcgACCGaCCCCUCguagcgACCGa -3'
miRNA:   3'- gCUAGAGu-UGGG--UGGC-GGGGAG------UGGC- -5'
16220 5' -58.2 NC_004065.1 + 78341 0.66 0.909686
Target:  5'- aCGAUUUCAGCCuCGUgGaCCCCagcuUCACCGu -3'
miRNA:   3'- -GCUAGAGUUGG-GUGgC-GGGG----AGUGGC- -5'
16220 5' -58.2 NC_004065.1 + 88132 0.66 0.911966
Target:  5'- uGAUUUCAACgaGCuuuaauagaaaggggCGCCCgCUCGCCGg -3'
miRNA:   3'- gCUAGAGUUGggUG---------------GCGGG-GAGUGGC- -5'
16220 5' -58.2 NC_004065.1 + 133054 0.66 0.897774
Target:  5'- gGGuUCUCuGCCCACgGuUCCCUCGgCGa -3'
miRNA:   3'- gCU-AGAGuUGGGUGgC-GGGGAGUgGC- -5'
16220 5' -58.2 NC_004065.1 + 93601 0.66 0.903836
Target:  5'- cCGAcCUCGGCUCACCggGCCCCcaggACCa -3'
miRNA:   3'- -GCUaGAGUUGGGUGG--CGGGGag--UGGc -5'
16220 5' -58.2 NC_004065.1 + 96616 0.66 0.915323
Target:  5'- aGAUCUgAcCCCuuCGUCCUcgUCGCCGg -3'
miRNA:   3'- gCUAGAgUuGGGugGCGGGG--AGUGGC- -5'
16220 5' -58.2 NC_004065.1 + 178231 0.66 0.915323
Target:  5'- gCGuGUCUCA-UCCACUGCCuuCCUCACa- -3'
miRNA:   3'- -GC-UAGAGUuGGGUGGCGG--GGAGUGgc -5'
16220 5' -58.2 NC_004065.1 + 126311 0.66 0.915323
Target:  5'- aCGAUCac-GCCCGCCaggcGCUCCcCGCCGc -3'
miRNA:   3'- -GCUAGaguUGGGUGG----CGGGGaGUGGC- -5'
16220 5' -58.2 NC_004065.1 + 119181 0.66 0.897774
Target:  5'- uCGAcgCgggCGGCCCG-CGCCCCgCACUGg -3'
miRNA:   3'- -GCUa-Ga--GUUGGGUgGCGGGGaGUGGC- -5'
16220 5' -58.2 NC_004065.1 + 159907 0.66 0.909686
Target:  5'- uCGAUCg--GCgCCGCCGCCgCCgcuGCCGg -3'
miRNA:   3'- -GCUAGaguUG-GGUGGCGG-GGag-UGGC- -5'
16220 5' -58.2 NC_004065.1 + 99291 0.66 0.920744
Target:  5'- -cGUC-CGAuCCCACCGCCCuCUCcuCCu -3'
miRNA:   3'- gcUAGaGUU-GGGUGGCGGG-GAGu-GGc -5'
16220 5' -58.2 NC_004065.1 + 222583 0.66 0.920744
Target:  5'- aGGUCUCcucGCCCGCUGCCacgaUgGCCu -3'
miRNA:   3'- gCUAGAGu--UGGGUGGCGGgg--AgUGGc -5'
16220 5' -58.2 NC_004065.1 + 87349 0.66 0.903836
Target:  5'- cCGAUaucgCUCAcucCCCcUCGCCCCUCGgCCa -3'
miRNA:   3'- -GCUA----GAGUu--GGGuGGCGGGGAGU-GGc -5'
16220 5' -58.2 NC_004065.1 + 107846 0.66 0.909686
Target:  5'- cCGAggagCUCAacaaACUCACCGCCCUguucgUCAugauCCGg -3'
miRNA:   3'- -GCUa---GAGU----UGGGUGGCGGGG-----AGU----GGC- -5'
16220 5' -58.2 NC_004065.1 + 28931 0.66 0.903836
Target:  5'- uCGGUUcaaggaAAgCCGCCGCCuCCgUCGCCGg -3'
miRNA:   3'- -GCUAGag----UUgGGUGGCGG-GG-AGUGGC- -5'
16220 5' -58.2 NC_004065.1 + 93696 0.66 0.909686
Target:  5'- cCGAaCU-GACCCACCgGCUCCUUAUUGa -3'
miRNA:   3'- -GCUaGAgUUGGGUGG-CGGGGAGUGGC- -5'
16220 5' -58.2 NC_004065.1 + 179335 0.66 0.909686
Target:  5'- aGAUCagcaggagCAGCCCAUgGa-CCUCACCGu -3'
miRNA:   3'- gCUAGa-------GUUGGGUGgCggGGAGUGGC- -5'
16220 5' -58.2 NC_004065.1 + 168863 0.66 0.920744
Target:  5'- gCGGUUcCAACCCgaucuucgacGCCGUUUCUUACCGc -3'
miRNA:   3'- -GCUAGaGUUGGG----------UGGCGGGGAGUGGC- -5'
16220 5' -58.2 NC_004065.1 + 155151 0.66 0.909686
Target:  5'- aGGUCggcugCGACcugcccgucuaCCACCGCCgCCUCAaCCu -3'
miRNA:   3'- gCUAGa----GUUG-----------GGUGGCGG-GGAGU-GGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.