miRNA display CGI


Results 21 - 40 of 100 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16220 5' -58.2 NC_004065.1 + 161981 0.66 0.903836
Target:  5'- uGAUCUCucGCUUcgACCGaCCCCUCguagcgACCGa -3'
miRNA:   3'- gCUAGAGu-UGGG--UGGC-GGGGAG------UGGC- -5'
16220 5' -58.2 NC_004065.1 + 107846 0.66 0.909686
Target:  5'- cCGAggagCUCAacaaACUCACCGCCCUguucgUCAugauCCGg -3'
miRNA:   3'- -GCUa---GAGU----UGGGUGGCGGGG-----AGU----GGC- -5'
16220 5' -58.2 NC_004065.1 + 90105 0.66 0.920744
Target:  5'- aCGAagUUCAACCCGCUGgCgC-CGCCGg -3'
miRNA:   3'- -GCUa-GAGUUGGGUGGCgGgGaGUGGC- -5'
16220 5' -58.2 NC_004065.1 + 28931 0.66 0.903836
Target:  5'- uCGGUUcaaggaAAgCCGCCGCCuCCgUCGCCGg -3'
miRNA:   3'- -GCUAGag----UUgGGUGGCGG-GG-AGUGGC- -5'
16220 5' -58.2 NC_004065.1 + 99291 0.66 0.920744
Target:  5'- -cGUC-CGAuCCCACCGCCCuCUCcuCCu -3'
miRNA:   3'- gcUAGaGUU-GGGUGGCGGG-GAGu-GGc -5'
16220 5' -58.2 NC_004065.1 + 222583 0.66 0.920744
Target:  5'- aGGUCUCcucGCCCGCUGCCacgaUgGCCu -3'
miRNA:   3'- gCUAGAGu--UGGGUGGCGGgg--AgUGGc -5'
16220 5' -58.2 NC_004065.1 + 159907 0.66 0.909686
Target:  5'- uCGAUCg--GCgCCGCCGCCgCCgcuGCCGg -3'
miRNA:   3'- -GCUAGaguUG-GGUGGCGG-GGag-UGGC- -5'
16220 5' -58.2 NC_004065.1 + 126311 0.66 0.915323
Target:  5'- aCGAUCac-GCCCGCCaggcGCUCCcCGCCGc -3'
miRNA:   3'- -GCUAGaguUGGGUGG----CGGGGaGUGGC- -5'
16220 5' -58.2 NC_004065.1 + 113864 0.66 0.915323
Target:  5'- gGAUCcgaGACCUACCgacccgGCCCCgagcCGCCGc -3'
miRNA:   3'- gCUAGag-UUGGGUGG------CGGGGa---GUGGC- -5'
16220 5' -58.2 NC_004065.1 + 91022 0.66 0.915323
Target:  5'- gCGGUC-CAuggCCACCGUCCCgagcucguagCACCGc -3'
miRNA:   3'- -GCUAGaGUug-GGUGGCGGGGa---------GUGGC- -5'
16220 5' -58.2 NC_004065.1 + 187192 0.67 0.857142
Target:  5'- gGGUCUCGACCgACC-CUCCgCACgGg -3'
miRNA:   3'- gCUAGAGUUGGgUGGcGGGGaGUGgC- -5'
16220 5' -58.2 NC_004065.1 + 191384 0.67 0.878349
Target:  5'- aCGA-CgaaGACUCGgCGCaCCCUCGCCGu -3'
miRNA:   3'- -GCUaGag-UUGGGUgGCG-GGGAGUGGC- -5'
16220 5' -58.2 NC_004065.1 + 59104 0.67 0.864402
Target:  5'- ---aCUCGACCCgauacuauGCCGCCCUg-ACCGu -3'
miRNA:   3'- gcuaGAGUUGGG--------UGGCGGGGagUGGC- -5'
16220 5' -58.2 NC_004065.1 + 120898 0.67 0.864402
Target:  5'- ----gUC-ACCCGCCGUCCC-CGCCa -3'
miRNA:   3'- gcuagAGuUGGGUGGCGGGGaGUGGc -5'
16220 5' -58.2 NC_004065.1 + 200026 0.67 0.854928
Target:  5'- aCGGUCgcgCAGCCUcuggcgauaccacuGCCGCCgCCgcCGCCGc -3'
miRNA:   3'- -GCUAGa--GUUGGG--------------UGGCGG-GGa-GUGGC- -5'
16220 5' -58.2 NC_004065.1 + 88364 0.67 0.869372
Target:  5'- cCGcUCUCGuccgcggccgcggcACcgCCACCGCCCUccgUCGCCGa -3'
miRNA:   3'- -GCuAGAGU--------------UG--GGUGGCGGGG---AGUGGC- -5'
16220 5' -58.2 NC_004065.1 + 85946 0.67 0.871473
Target:  5'- cCGAUCUCA--UCGCCGUCCUcgacgCGCCa -3'
miRNA:   3'- -GCUAGAGUugGGUGGCGGGGa----GUGGc -5'
16220 5' -58.2 NC_004065.1 + 163370 0.67 0.871473
Target:  5'- uCGAacaCUCGccgggcGCCCACCGCgCCgaaGCCGa -3'
miRNA:   3'- -GCUa--GAGU------UGGGUGGCGgGGag-UGGC- -5'
16220 5' -58.2 NC_004065.1 + 166938 0.67 0.871473
Target:  5'- aGGUC-CAACgC-CCGUCgCUCGCCGg -3'
miRNA:   3'- gCUAGaGUUGgGuGGCGGgGAGUGGC- -5'
16220 5' -58.2 NC_004065.1 + 15511 0.67 0.876307
Target:  5'- uCGAUcCUCAacaacaccguuuccACCgACCGUCCCgCACCc -3'
miRNA:   3'- -GCUA-GAGU--------------UGGgUGGCGGGGaGUGGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.