miRNA display CGI


Results 61 - 80 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16220 5' -58.2 NC_004065.1 + 113650 0.68 0.842076
Target:  5'- uCGAguaUCUCAGCgCCGgguuccCCGCCCuCUCGCUc -3'
miRNA:   3'- -GCU---AGAGUUG-GGU------GGCGGG-GAGUGGc -5'
16220 5' -58.2 NC_004065.1 + 207717 0.68 0.849698
Target:  5'- gGGUCgUCAACgUCACCGUCCacccCACCGa -3'
miRNA:   3'- gCUAG-AGUUG-GGUGGCGGGga--GUGGC- -5'
16220 5' -58.2 NC_004065.1 + 48897 0.68 0.834282
Target:  5'- aCGuuUCUCucCCCGCCGCCgC-CACCc -3'
miRNA:   3'- -GCu-AGAGuuGGGUGGCGGgGaGUGGc -5'
16220 5' -58.2 NC_004065.1 + 109606 0.68 0.834282
Target:  5'- cCGcgCUCGACCCccggGCCGCggugCCCacCACCGu -3'
miRNA:   3'- -GCuaGAGUUGGG----UGGCG----GGGa-GUGGC- -5'
16220 5' -58.2 NC_004065.1 + 127383 0.68 0.834282
Target:  5'- aGAUCUCGccguucgaggACUC-CCGCCUCUCccagGCCGu -3'
miRNA:   3'- gCUAGAGU----------UGGGuGGCGGGGAG----UGGC- -5'
16220 5' -58.2 NC_004065.1 + 147690 0.68 0.848188
Target:  5'- gCGAUCgucagCGACCCACCGgCUCggaugagcuggaCGCCGc -3'
miRNA:   3'- -GCUAGa----GUUGGGUGGCgGGGa-----------GUGGC- -5'
16220 5' -58.2 NC_004065.1 + 81146 0.69 0.757487
Target:  5'- aGGUUUCGucCCCcUCGCCCCcCGCCGc -3'
miRNA:   3'- gCUAGAGUu-GGGuGGCGGGGaGUGGC- -5'
16220 5' -58.2 NC_004065.1 + 99844 0.69 0.766523
Target:  5'- -cGUUUCAGCgUCugCGCCCCgaUCGCCGc -3'
miRNA:   3'- gcUAGAGUUG-GGugGCGGGG--AGUGGC- -5'
16220 5' -58.2 NC_004065.1 + 177510 0.69 0.766523
Target:  5'- gCGGcacUCUCuGCaCCACCGCCaCCgcgCGCCa -3'
miRNA:   3'- -GCU---AGAGuUG-GGUGGCGG-GGa--GUGGc -5'
16220 5' -58.2 NC_004065.1 + 187552 0.69 0.792088
Target:  5'- uGAUCUCAcagacacACUcuauccaguuuuCACCGUCCUUCACCu -3'
miRNA:   3'- gCUAGAGU-------UGG------------GUGGCGGGGAGUGGc -5'
16220 5' -58.2 NC_004065.1 + 86951 0.69 0.792951
Target:  5'- aGAUucgCUCGucGCCCccgaAgCGCCCCUCGCCc -3'
miRNA:   3'- gCUA---GAGU--UGGG----UgGCGGGGAGUGGc -5'
16220 5' -58.2 NC_004065.1 + 188895 0.69 0.792951
Target:  5'- aCGAgaagCUCAcggcccgacgACCCggacaccuGCCGCUCCUCACUa -3'
miRNA:   3'- -GCUa---GAGU----------UGGG--------UGGCGGGGAGUGGc -5'
16220 5' -58.2 NC_004065.1 + 155424 0.69 0.775451
Target:  5'- gGAaCUCGGCcgCCACCGCCaCCgacggCACCa -3'
miRNA:   3'- gCUaGAGUUG--GGUGGCGG-GGa----GUGGc -5'
16220 5' -58.2 NC_004065.1 + 194398 0.69 0.775451
Target:  5'- cCGAUgaCAucCCCGCCGCCgCCgcCGCCGu -3'
miRNA:   3'- -GCUAgaGUu-GGGUGGCGG-GGa-GUGGC- -5'
16220 5' -58.2 NC_004065.1 + 198566 0.69 0.775451
Target:  5'- gCGGUCUCccuGGCuaCCGCCGUCCUUCAgCCa -3'
miRNA:   3'- -GCUAGAG---UUG--GGUGGCGGGGAGU-GGc -5'
16220 5' -58.2 NC_004065.1 + 98722 0.69 0.783387
Target:  5'- --uUCUCGACCaccuugaCGCCGUCgCUCACCa -3'
miRNA:   3'- gcuAGAGUUGG-------GUGGCGGgGAGUGGc -5'
16220 5' -58.2 NC_004065.1 + 171430 0.69 0.784263
Target:  5'- uCGAUCUCGACuCCGCCGUCgucggcgagCUCAuCCGc -3'
miRNA:   3'- -GCUAGAGUUG-GGUGGCGGg--------GAGU-GGC- -5'
16220 5' -58.2 NC_004065.1 + 29462 0.69 0.792951
Target:  5'- --uUCUCcACCCguguucccgcuGCCGCCCgUCGCCc -3'
miRNA:   3'- gcuAGAGuUGGG-----------UGGCGGGgAGUGGc -5'
16220 5' -58.2 NC_004065.1 + 93022 0.7 0.748351
Target:  5'- gGAUCUCGucGCCCucGCUGUUCCUggCGCCGa -3'
miRNA:   3'- gCUAGAGU--UGGG--UGGCGGGGA--GUGGC- -5'
16220 5' -58.2 NC_004065.1 + 101635 0.7 0.748351
Target:  5'- ---gCUCGGCCCccacaGCCGgCUCUCGCCGc -3'
miRNA:   3'- gcuaGAGUUGGG-----UGGCgGGGAGUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.