miRNA display CGI


Results 1 - 20 of 100 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16220 5' -58.2 NC_004065.1 + 207855 1.08 0.003585
Target:  5'- cCGAUCUCAACCCACCGCCCCUCACCGu -3'
miRNA:   3'- -GCUAGAGUUGGGUGGCGGGGAGUGGC- -5'
16220 5' -58.2 NC_004065.1 + 1023 0.81 0.209043
Target:  5'- gCGAUCUCGcUCCGCgCGCuCCCUCGCCGu -3'
miRNA:   3'- -GCUAGAGUuGGGUG-GCG-GGGAGUGGC- -5'
16220 5' -58.2 NC_004065.1 + 205961 0.78 0.321336
Target:  5'- uCGAgccgCUCAugCUGCCGCCgCUCACCa -3'
miRNA:   3'- -GCUa---GAGUugGGUGGCGGgGAGUGGc -5'
16220 5' -58.2 NC_004065.1 + 154356 0.78 0.314434
Target:  5'- aGAa-UCAGCCCGCgGCCgCCUCGCCGa -3'
miRNA:   3'- gCUagAGUUGGGUGgCGG-GGAGUGGC- -5'
16220 5' -58.2 NC_004065.1 + 131616 0.77 0.370472
Target:  5'- -cAUCUCAugCCGCCGCCacucucaucgcccuCCUCGCCa -3'
miRNA:   3'- gcUAGAGUugGGUGGCGG--------------GGAGUGGc -5'
16220 5' -58.2 NC_004065.1 + 87230 0.74 0.518724
Target:  5'- uGAUCUCGAagaUgGCCGCCCCcggCGCCa -3'
miRNA:   3'- gCUAGAGUUg--GgUGGCGGGGa--GUGGc -5'
16220 5' -58.2 NC_004065.1 + 86751 0.74 0.518724
Target:  5'- ---cCUCGGCCCuugaagcuGCCGCCCC-CGCCGc -3'
miRNA:   3'- gcuaGAGUUGGG--------UGGCGGGGaGUGGC- -5'
16220 5' -58.2 NC_004065.1 + 62597 0.73 0.585242
Target:  5'- aGGUU--AGCgCCGCCGCCCC-CGCCGg -3'
miRNA:   3'- gCUAGagUUG-GGUGGCGGGGaGUGGC- -5'
16220 5' -58.2 NC_004065.1 + 218188 0.73 0.537469
Target:  5'- uGAUCUUGAUCCGuCCGaCCCCgcCACCGa -3'
miRNA:   3'- gCUAGAGUUGGGU-GGC-GGGGa-GUGGC- -5'
16220 5' -58.2 NC_004065.1 + 90692 0.72 0.592975
Target:  5'- uGGUCUCccgcaugcguuUCCugCGCUCCUCGCCGu -3'
miRNA:   3'- gCUAGAGuu---------GGGugGCGGGGAGUGGC- -5'
16220 5' -58.2 NC_004065.1 + 38791 0.72 0.604605
Target:  5'- aCGGUCUgGcgcccgcagaGCCCcauCCGCCUCUCGCUGa -3'
miRNA:   3'- -GCUAGAgU----------UGGGu--GGCGGGGAGUGGC- -5'
16220 5' -58.2 NC_004065.1 + 39923 0.71 0.691876
Target:  5'- --uUCUCAACaaguaGCCGCCCC-CACCu -3'
miRNA:   3'- gcuAGAGUUGgg---UGGCGGGGaGUGGc -5'
16220 5' -58.2 NC_004065.1 + 87473 0.71 0.688995
Target:  5'- aGAUCUCcgGACCCGCCaccgggcagauaucGCacaaCCUCGCCa -3'
miRNA:   3'- gCUAGAG--UUGGGUGG--------------CGg---GGAGUGGc -5'
16220 5' -58.2 NC_004065.1 + 177933 0.71 0.672607
Target:  5'- uCGGUCuUCGGCgCCGCCGCUUCUC-CUGg -3'
miRNA:   3'- -GCUAG-AGUUG-GGUGGCGGGGAGuGGC- -5'
16220 5' -58.2 NC_004065.1 + 202170 0.71 0.643498
Target:  5'- -cAUCUCGACCaguUCGCCCCgcggCACCa -3'
miRNA:   3'- gcUAGAGUUGGgu-GGCGGGGa---GUGGc -5'
16220 5' -58.2 NC_004065.1 + 102352 0.7 0.733545
Target:  5'- uGGUCgugCAAcaacgugaacaugguCCCGCCGCCCUcggCGCCGc -3'
miRNA:   3'- gCUAGa--GUU---------------GGGUGGCGGGGa--GUGGC- -5'
16220 5' -58.2 NC_004065.1 + 159069 0.7 0.739123
Target:  5'- gCGAUCUgGACCgACCGCCgCgacCCGg -3'
miRNA:   3'- -GCUAGAgUUGGgUGGCGGgGaguGGC- -5'
16220 5' -58.2 NC_004065.1 + 198343 0.7 0.72981
Target:  5'- aGAUCccccUCAGCUCGCCgggGUCCUUCGCCa -3'
miRNA:   3'- gCUAG----AGUUGGGUGG---CGGGGAGUGGc -5'
16220 5' -58.2 NC_004065.1 + 18064 0.7 0.69858
Target:  5'- uGAUCUCGACgauggcggcagcgaCCGCCGCagCCUCgugGCCGg -3'
miRNA:   3'- gCUAGAGUUG--------------GGUGGCGg-GGAG---UGGC- -5'
16220 5' -58.2 NC_004065.1 + 150663 0.7 0.739123
Target:  5'- aGAUCUCGaacuguuccagcGCCgCGCCGCCCUcgUCuCCGc -3'
miRNA:   3'- gCUAGAGU------------UGG-GUGGCGGGG--AGuGGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.