Results 61 - 80 of 100 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
16220 | 5' | -58.2 | NC_004065.1 | + | 164676 | 0.67 | 0.890865 |
Target: 5'- uCGAUCcgacCGACCCacccgcagcugcuGCCGCCgCCgcCGCCGg -3' miRNA: 3'- -GCUAGa---GUUGGG-------------UGGCGG-GGa-GUGGC- -5' |
|||||||
16220 | 5' | -58.2 | NC_004065.1 | + | 135628 | 0.67 | 0.885028 |
Target: 5'- gGGUCUaCGGCgCCACCaGCCgacagCUCGCCGc -3' miRNA: 3'- gCUAGA-GUUG-GGUGG-CGGg----GAGUGGC- -5' |
|||||||
16220 | 5' | -58.2 | NC_004065.1 | + | 191384 | 0.67 | 0.878349 |
Target: 5'- aCGA-CgaaGACUCGgCGCaCCCUCGCCGu -3' miRNA: 3'- -GCUaGag-UUGGGUgGCG-GGGAGUGGC- -5' |
|||||||
16220 | 5' | -58.2 | NC_004065.1 | + | 15511 | 0.67 | 0.876307 |
Target: 5'- uCGAUcCUCAacaacaccguuuccACCgACCGUCCCgCACCc -3' miRNA: 3'- -GCUA-GAGU--------------UGGgUGGCGGGGaGUGGc -5' |
|||||||
16220 | 5' | -58.2 | NC_004065.1 | + | 117461 | 0.67 | 0.885028 |
Target: 5'- -cGUC-CGGCuCCGCgGCCgCUCGCCGc -3' miRNA: 3'- gcUAGaGUUG-GGUGgCGGgGAGUGGC- -5' |
|||||||
16220 | 5' | -58.2 | NC_004065.1 | + | 166938 | 0.67 | 0.871473 |
Target: 5'- aGGUC-CAACgC-CCGUCgCUCGCCGg -3' miRNA: 3'- gCUAGaGUUGgGuGGCGGgGAGUGGC- -5' |
|||||||
16220 | 5' | -58.2 | NC_004065.1 | + | 163370 | 0.67 | 0.871473 |
Target: 5'- uCGAacaCUCGccgggcGCCCACCGCgCCgaaGCCGa -3' miRNA: 3'- -GCUa--GAGU------UGGGUGGCGgGGag-UGGC- -5' |
|||||||
16220 | 5' | -58.2 | NC_004065.1 | + | 85946 | 0.67 | 0.871473 |
Target: 5'- cCGAUCUCA--UCGCCGUCCUcgacgCGCCa -3' miRNA: 3'- -GCUAGAGUugGGUGGCGGGGa----GUGGc -5' |
|||||||
16220 | 5' | -58.2 | NC_004065.1 | + | 88364 | 0.67 | 0.869372 |
Target: 5'- cCGcUCUCGuccgcggccgcggcACcgCCACCGCCCUccgUCGCCGa -3' miRNA: 3'- -GCuAGAGU--------------UG--GGUGGCGGGG---AGUGGC- -5' |
|||||||
16220 | 5' | -58.2 | NC_004065.1 | + | 206416 | 0.67 | 0.891504 |
Target: 5'- ----gUCcACCCGCCuGCCCgcCUCACCGc -3' miRNA: 3'- gcuagAGuUGGGUGG-CGGG--GAGUGGC- -5' |
|||||||
16220 | 5' | -58.2 | NC_004065.1 | + | 168863 | 0.66 | 0.920744 |
Target: 5'- gCGGUUcCAACCCgaucuucgacGCCGUUUCUUACCGc -3' miRNA: 3'- -GCUAGaGUUGGG----------UGGCGGGGAGUGGC- -5' |
|||||||
16220 | 5' | -58.2 | NC_004065.1 | + | 161981 | 0.66 | 0.903836 |
Target: 5'- uGAUCUCucGCUUcgACCGaCCCCUCguagcgACCGa -3' miRNA: 3'- gCUAGAGu-UGGG--UGGC-GGGGAG------UGGC- -5' |
|||||||
16220 | 5' | -58.2 | NC_004065.1 | + | 99291 | 0.66 | 0.920744 |
Target: 5'- -cGUC-CGAuCCCACCGCCCuCUCcuCCu -3' miRNA: 3'- gcUAGaGUU-GGGUGGCGGG-GAGu-GGc -5' |
|||||||
16220 | 5' | -58.2 | NC_004065.1 | + | 90105 | 0.66 | 0.920744 |
Target: 5'- aCGAagUUCAACCCGCUGgCgC-CGCCGg -3' miRNA: 3'- -GCUa-GAGUUGGGUGGCgGgGaGUGGC- -5' |
|||||||
16220 | 5' | -58.2 | NC_004065.1 | + | 222583 | 0.66 | 0.920744 |
Target: 5'- aGGUCUCcucGCCCGCUGCCacgaUgGCCu -3' miRNA: 3'- gCUAGAGu--UGGGUGGCGGgg--AgUGGc -5' |
|||||||
16220 | 5' | -58.2 | NC_004065.1 | + | 126311 | 0.66 | 0.915323 |
Target: 5'- aCGAUCac-GCCCGCCaggcGCUCCcCGCCGc -3' miRNA: 3'- -GCUAGaguUGGGUGG----CGGGGaGUGGC- -5' |
|||||||
16220 | 5' | -58.2 | NC_004065.1 | + | 96616 | 0.66 | 0.915323 |
Target: 5'- aGAUCUgAcCCCuuCGUCCUcgUCGCCGg -3' miRNA: 3'- gCUAGAgUuGGGugGCGGGG--AGUGGC- -5' |
|||||||
16220 | 5' | -58.2 | NC_004065.1 | + | 161508 | 0.66 | 0.913093 |
Target: 5'- ---cCUCGGCCUccgggagaugcguCCGCCgCCUCACCu -3' miRNA: 3'- gcuaGAGUUGGGu------------GGCGG-GGAGUGGc -5' |
|||||||
16220 | 5' | -58.2 | NC_004065.1 | + | 88132 | 0.66 | 0.911966 |
Target: 5'- uGAUUUCAACgaGCuuuaauagaaaggggCGCCCgCUCGCCGg -3' miRNA: 3'- gCUAGAGUUGggUG---------------GCGGG-GAGUGGC- -5' |
|||||||
16220 | 5' | -58.2 | NC_004065.1 | + | 78341 | 0.66 | 0.909686 |
Target: 5'- aCGAUUUCAGCCuCGUgGaCCCCagcuUCACCGu -3' miRNA: 3'- -GCUAGAGUUGG-GUGgC-GGGG----AGUGGC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home