Results 1 - 20 of 100 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
16220 | 5' | -58.2 | NC_004065.1 | + | 207855 | 1.08 | 0.003585 |
Target: 5'- cCGAUCUCAACCCACCGCCCCUCACCGu -3' miRNA: 3'- -GCUAGAGUUGGGUGGCGGGGAGUGGC- -5' |
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16220 | 5' | -58.2 | NC_004065.1 | + | 1023 | 0.81 | 0.209043 |
Target: 5'- gCGAUCUCGcUCCGCgCGCuCCCUCGCCGu -3' miRNA: 3'- -GCUAGAGUuGGGUG-GCG-GGGAGUGGC- -5' |
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16220 | 5' | -58.2 | NC_004065.1 | + | 154356 | 0.78 | 0.314434 |
Target: 5'- aGAa-UCAGCCCGCgGCCgCCUCGCCGa -3' miRNA: 3'- gCUagAGUUGGGUGgCGG-GGAGUGGC- -5' |
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16220 | 5' | -58.2 | NC_004065.1 | + | 205961 | 0.78 | 0.321336 |
Target: 5'- uCGAgccgCUCAugCUGCCGCCgCUCACCa -3' miRNA: 3'- -GCUa---GAGUugGGUGGCGGgGAGUGGc -5' |
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16220 | 5' | -58.2 | NC_004065.1 | + | 131616 | 0.77 | 0.370472 |
Target: 5'- -cAUCUCAugCCGCCGCCacucucaucgcccuCCUCGCCa -3' miRNA: 3'- gcUAGAGUugGGUGGCGG--------------GGAGUGGc -5' |
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16220 | 5' | -58.2 | NC_004065.1 | + | 87230 | 0.74 | 0.518724 |
Target: 5'- uGAUCUCGAagaUgGCCGCCCCcggCGCCa -3' miRNA: 3'- gCUAGAGUUg--GgUGGCGGGGa--GUGGc -5' |
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16220 | 5' | -58.2 | NC_004065.1 | + | 86751 | 0.74 | 0.518724 |
Target: 5'- ---cCUCGGCCCuugaagcuGCCGCCCC-CGCCGc -3' miRNA: 3'- gcuaGAGUUGGG--------UGGCGGGGaGUGGC- -5' |
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16220 | 5' | -58.2 | NC_004065.1 | + | 218188 | 0.73 | 0.537469 |
Target: 5'- uGAUCUUGAUCCGuCCGaCCCCgcCACCGa -3' miRNA: 3'- gCUAGAGUUGGGU-GGC-GGGGa-GUGGC- -5' |
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16220 | 5' | -58.2 | NC_004065.1 | + | 62597 | 0.73 | 0.585242 |
Target: 5'- aGGUU--AGCgCCGCCGCCCC-CGCCGg -3' miRNA: 3'- gCUAGagUUG-GGUGGCGGGGaGUGGC- -5' |
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16220 | 5' | -58.2 | NC_004065.1 | + | 90692 | 0.72 | 0.592975 |
Target: 5'- uGGUCUCccgcaugcguuUCCugCGCUCCUCGCCGu -3' miRNA: 3'- gCUAGAGuu---------GGGugGCGGGGAGUGGC- -5' |
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16220 | 5' | -58.2 | NC_004065.1 | + | 38791 | 0.72 | 0.604605 |
Target: 5'- aCGGUCUgGcgcccgcagaGCCCcauCCGCCUCUCGCUGa -3' miRNA: 3'- -GCUAGAgU----------UGGGu--GGCGGGGAGUGGC- -5' |
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16220 | 5' | -58.2 | NC_004065.1 | + | 202170 | 0.71 | 0.643498 |
Target: 5'- -cAUCUCGACCaguUCGCCCCgcggCACCa -3' miRNA: 3'- gcUAGAGUUGGgu-GGCGGGGa---GUGGc -5' |
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16220 | 5' | -58.2 | NC_004065.1 | + | 177933 | 0.71 | 0.672607 |
Target: 5'- uCGGUCuUCGGCgCCGCCGCUUCUC-CUGg -3' miRNA: 3'- -GCUAG-AGUUG-GGUGGCGGGGAGuGGC- -5' |
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16220 | 5' | -58.2 | NC_004065.1 | + | 87473 | 0.71 | 0.688995 |
Target: 5'- aGAUCUCcgGACCCGCCaccgggcagauaucGCacaaCCUCGCCa -3' miRNA: 3'- gCUAGAG--UUGGGUGG--------------CGg---GGAGUGGc -5' |
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16220 | 5' | -58.2 | NC_004065.1 | + | 39923 | 0.71 | 0.691876 |
Target: 5'- --uUCUCAACaaguaGCCGCCCC-CACCu -3' miRNA: 3'- gcuAGAGUUGgg---UGGCGGGGaGUGGc -5' |
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16220 | 5' | -58.2 | NC_004065.1 | + | 18064 | 0.7 | 0.69858 |
Target: 5'- uGAUCUCGACgauggcggcagcgaCCGCCGCagCCUCgugGCCGg -3' miRNA: 3'- gCUAGAGUUG--------------GGUGGCGg-GGAG---UGGC- -5' |
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16220 | 5' | -58.2 | NC_004065.1 | + | 198343 | 0.7 | 0.72981 |
Target: 5'- aGAUCccccUCAGCUCGCCgggGUCCUUCGCCa -3' miRNA: 3'- gCUAG----AGUUGGGUGG---CGGGGAGUGGc -5' |
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16220 | 5' | -58.2 | NC_004065.1 | + | 102352 | 0.7 | 0.733545 |
Target: 5'- uGGUCgugCAAcaacgugaacaugguCCCGCCGCCCUcggCGCCGc -3' miRNA: 3'- gCUAGa--GUU---------------GGGUGGCGGGGa--GUGGC- -5' |
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16220 | 5' | -58.2 | NC_004065.1 | + | 159069 | 0.7 | 0.739123 |
Target: 5'- gCGAUCUgGACCgACCGCCgCgacCCGg -3' miRNA: 3'- -GCUAGAgUUGGgUGGCGGgGaguGGC- -5' |
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16220 | 5' | -58.2 | NC_004065.1 | + | 150663 | 0.7 | 0.739123 |
Target: 5'- aGAUCUCGaacuguuccagcGCCgCGCCGCCCUcgUCuCCGc -3' miRNA: 3'- gCUAGAGU------------UGG-GUGGCGGGG--AGuGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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