miRNA display CGI


Results 41 - 60 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16220 5' -58.2 NC_004065.1 + 109606 0.68 0.834282
Target:  5'- cCGcgCUCGACCCccggGCCGCggugCCCacCACCGu -3'
miRNA:   3'- -GCuaGAGUUGGG----UGGCG----GGGa-GUGGC- -5'
16220 5' -58.2 NC_004065.1 + 48897 0.68 0.834282
Target:  5'- aCGuuUCUCucCCCGCCGCCgC-CACCc -3'
miRNA:   3'- -GCu-AGAGuuGGGUGGCGGgGaGUGGc -5'
16220 5' -58.2 NC_004065.1 + 163892 0.68 0.842076
Target:  5'- cCGGUCcgCGGCCCAgCGCgCCagCGCCu -3'
miRNA:   3'- -GCUAGa-GUUGGGUgGCGgGGa-GUGGc -5'
16220 5' -58.2 NC_004065.1 + 32616 0.68 0.842076
Target:  5'- aGAUCUaaUAACCC-UCGgCCgUCACCGg -3'
miRNA:   3'- gCUAGA--GUUGGGuGGCgGGgAGUGGC- -5'
16220 5' -58.2 NC_004065.1 + 113650 0.68 0.842076
Target:  5'- uCGAguaUCUCAGCgCCGgguuccCCGCCCuCUCGCUc -3'
miRNA:   3'- -GCU---AGAGUUG-GGU------GGCGGG-GAGUGGc -5'
16220 5' -58.2 NC_004065.1 + 147690 0.68 0.848188
Target:  5'- gCGAUCgucagCGACCCACCGgCUCggaugagcuggaCGCCGc -3'
miRNA:   3'- -GCUAGa----GUUGGGUGGCgGGGa-----------GUGGC- -5'
16220 5' -58.2 NC_004065.1 + 19826 0.68 0.849698
Target:  5'- aCGGUCUCAAgCa--CGCUCCUC-CCGu -3'
miRNA:   3'- -GCUAGAGUUgGgugGCGGGGAGuGGC- -5'
16220 5' -58.2 NC_004065.1 + 207717 0.68 0.849698
Target:  5'- gGGUCgUCAACgUCACCGUCCacccCACCGa -3'
miRNA:   3'- gCUAG-AGUUG-GGUGGCGGGga--GUGGC- -5'
16220 5' -58.2 NC_004065.1 + 200026 0.67 0.854928
Target:  5'- aCGGUCgcgCAGCCUcuggcgauaccacuGCCGCCgCCgcCGCCGc -3'
miRNA:   3'- -GCUAGa--GUUGGG--------------UGGCGG-GGa-GUGGC- -5'
16220 5' -58.2 NC_004065.1 + 187192 0.67 0.857142
Target:  5'- gGGUCUCGACCgACC-CUCCgCACgGg -3'
miRNA:   3'- gCUAGAGUUGGgUGGcGGGGaGUGgC- -5'
16220 5' -58.2 NC_004065.1 + 1692 0.67 0.864402
Target:  5'- aGGUCguucCGuacguCCCACCGCCCaaagCACCc -3'
miRNA:   3'- gCUAGa---GUu----GGGUGGCGGGga--GUGGc -5'
16220 5' -58.2 NC_004065.1 + 59104 0.67 0.864402
Target:  5'- ---aCUCGACCCgauacuauGCCGCCCUg-ACCGu -3'
miRNA:   3'- gcuaGAGUUGGG--------UGGCGGGGagUGGC- -5'
16220 5' -58.2 NC_004065.1 + 120898 0.67 0.864402
Target:  5'- ----gUC-ACCCGCCGUCCC-CGCCa -3'
miRNA:   3'- gcuagAGuUGGGUGGCGGGGaGUGGc -5'
16220 5' -58.2 NC_004065.1 + 88364 0.67 0.869372
Target:  5'- cCGcUCUCGuccgcggccgcggcACcgCCACCGCCCUccgUCGCCGa -3'
miRNA:   3'- -GCuAGAGU--------------UG--GGUGGCGGGG---AGUGGC- -5'
16220 5' -58.2 NC_004065.1 + 148137 0.67 0.870774
Target:  5'- cCGAcCUCAgcacGCCCGCCGUgCCCgagaaccaucucuUCACCa -3'
miRNA:   3'- -GCUaGAGU----UGGGUGGCG-GGG-------------AGUGGc -5'
16220 5' -58.2 NC_004065.1 + 85946 0.67 0.871473
Target:  5'- cCGAUCUCA--UCGCCGUCCUcgacgCGCCa -3'
miRNA:   3'- -GCUAGAGUugGGUGGCGGGGa----GUGGc -5'
16220 5' -58.2 NC_004065.1 + 163370 0.67 0.871473
Target:  5'- uCGAacaCUCGccgggcGCCCACCGCgCCgaaGCCGa -3'
miRNA:   3'- -GCUa--GAGU------UGGGUGGCGgGGag-UGGC- -5'
16220 5' -58.2 NC_004065.1 + 166938 0.67 0.871473
Target:  5'- aGGUC-CAACgC-CCGUCgCUCGCCGg -3'
miRNA:   3'- gCUAGaGUUGgGuGGCGGgGAGUGGC- -5'
16220 5' -58.2 NC_004065.1 + 109567 0.67 0.871473
Target:  5'- uGGUCUgAGuuCCCGCCGCCCgaCAgCa -3'
miRNA:   3'- gCUAGAgUU--GGGUGGCGGGgaGUgGc -5'
16220 5' -58.2 NC_004065.1 + 15511 0.67 0.876307
Target:  5'- uCGAUcCUCAacaacaccguuuccACCgACCGUCCCgCACCc -3'
miRNA:   3'- -GCUA-GAGU--------------UGGgUGGCGGGGaGUGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.