miRNA display CGI


Results 21 - 40 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16220 5' -58.2 NC_004065.1 + 113204 0.66 0.909686
Target:  5'- -cAUCaCGGCCaCGCUGCCCCggucggUACCGg -3'
miRNA:   3'- gcUAGaGUUGG-GUGGCGGGGa-----GUGGC- -5'
16220 5' -58.2 NC_004065.1 + 155151 0.66 0.909686
Target:  5'- aGGUCggcugCGACcugcccgucuaCCACCGCCgCCUCAaCCu -3'
miRNA:   3'- gCUAGa----GUUG-----------GGUGGCGG-GGAGU-GGc -5'
16220 5' -58.2 NC_004065.1 + 159907 0.66 0.909686
Target:  5'- uCGAUCg--GCgCCGCCGCCgCCgcuGCCGg -3'
miRNA:   3'- -GCUAGaguUG-GGUGGCGG-GGag-UGGC- -5'
16220 5' -58.2 NC_004065.1 + 93696 0.66 0.909686
Target:  5'- cCGAaCU-GACCCACCgGCUCCUUAUUGa -3'
miRNA:   3'- -GCUaGAgUUGGGUGG-CGGGGAGUGGC- -5'
16220 5' -58.2 NC_004065.1 + 93601 0.66 0.903836
Target:  5'- cCGAcCUCGGCUCACCggGCCCCcaggACCa -3'
miRNA:   3'- -GCUaGAGUUGGGUGG--CGGGGag--UGGc -5'
16220 5' -58.2 NC_004065.1 + 87349 0.66 0.903836
Target:  5'- cCGAUaucgCUCAcucCCCcUCGCCCCUCGgCCa -3'
miRNA:   3'- -GCUA----GAGUu--GGGuGGCGGGGAGU-GGc -5'
16220 5' -58.2 NC_004065.1 + 161981 0.66 0.903836
Target:  5'- uGAUCUCucGCUUcgACCGaCCCCUCguagcgACCGa -3'
miRNA:   3'- gCUAGAGu-UGGG--UGGC-GGGGAG------UGGC- -5'
16220 5' -58.2 NC_004065.1 + 28931 0.66 0.903836
Target:  5'- uCGGUUcaaggaAAgCCGCCGCCuCCgUCGCCGg -3'
miRNA:   3'- -GCUAGag----UUgGGUGGCGG-GG-AGUGGC- -5'
16220 5' -58.2 NC_004065.1 + 133054 0.66 0.897774
Target:  5'- gGGuUCUCuGCCCACgGuUCCCUCGgCGa -3'
miRNA:   3'- gCU-AGAGuUGGGUGgC-GGGGAGUgGC- -5'
16220 5' -58.2 NC_004065.1 + 119181 0.66 0.897774
Target:  5'- uCGAcgCgggCGGCCCG-CGCCCCgCACUGg -3'
miRNA:   3'- -GCUa-Ga--GUUGGGUgGCGGGGaGUGGC- -5'
16220 5' -58.2 NC_004065.1 + 206416 0.67 0.891504
Target:  5'- ----gUCcACCCGCCuGCCCgcCUCACCGc -3'
miRNA:   3'- gcuagAGuUGGGUGG-CGGG--GAGUGGC- -5'
16220 5' -58.2 NC_004065.1 + 164676 0.67 0.890865
Target:  5'- uCGAUCcgacCGACCCacccgcagcugcuGCCGCCgCCgcCGCCGg -3'
miRNA:   3'- -GCUAGa---GUUGGG-------------UGGCGG-GGa-GUGGC- -5'
16220 5' -58.2 NC_004065.1 + 45144 0.67 0.889582
Target:  5'- cCGAuccucUCUCGuucccggcguCCCGCCGCCCgCUCgacucgaucccucgGCCGa -3'
miRNA:   3'- -GCU-----AGAGUu---------GGGUGGCGGG-GAG--------------UGGC- -5'
16220 5' -58.2 NC_004065.1 + 80969 0.67 0.885028
Target:  5'- cCGAUCg--GCCUGCCGCCgCCgucgUCGCCc -3'
miRNA:   3'- -GCUAGaguUGGGUGGCGG-GG----AGUGGc -5'
16220 5' -58.2 NC_004065.1 + 135628 0.67 0.885028
Target:  5'- gGGUCUaCGGCgCCACCaGCCgacagCUCGCCGc -3'
miRNA:   3'- gCUAGA-GUUG-GGUGG-CGGg----GAGUGGC- -5'
16220 5' -58.2 NC_004065.1 + 63872 0.67 0.885028
Target:  5'- aGAcgUCGGCgCCGCUGCCgCCggCGCCGa -3'
miRNA:   3'- gCUagAGUUG-GGUGGCGG-GGa-GUGGC- -5'
16220 5' -58.2 NC_004065.1 + 138257 0.67 0.885028
Target:  5'- aCGAUCUCuccAGCCuCGCC-CCCgUCGCUc -3'
miRNA:   3'- -GCUAGAG---UUGG-GUGGcGGGgAGUGGc -5'
16220 5' -58.2 NC_004065.1 + 117461 0.67 0.885028
Target:  5'- -cGUC-CGGCuCCGCgGCCgCUCGCCGc -3'
miRNA:   3'- gcUAGaGUUG-GGUGgCGGgGAGUGGC- -5'
16220 5' -58.2 NC_004065.1 + 191384 0.67 0.878349
Target:  5'- aCGA-CgaaGACUCGgCGCaCCCUCGCCGu -3'
miRNA:   3'- -GCUaGag-UUGGGUgGCG-GGGAGUGGC- -5'
16220 5' -58.2 NC_004065.1 + 168799 0.67 0.878349
Target:  5'- --cUCUCcGCCCuCUGCuCCUUCGCCa -3'
miRNA:   3'- gcuAGAGuUGGGuGGCG-GGGAGUGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.