Results 41 - 60 of 100 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
16220 | 5' | -58.2 | NC_004065.1 | + | 15511 | 0.67 | 0.876307 |
Target: 5'- uCGAUcCUCAacaacaccguuuccACCgACCGUCCCgCACCc -3' miRNA: 3'- -GCUA-GAGU--------------UGGgUGGCGGGGaGUGGc -5' |
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16220 | 5' | -58.2 | NC_004065.1 | + | 85946 | 0.67 | 0.871473 |
Target: 5'- cCGAUCUCA--UCGCCGUCCUcgacgCGCCa -3' miRNA: 3'- -GCUAGAGUugGGUGGCGGGGa----GUGGc -5' |
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16220 | 5' | -58.2 | NC_004065.1 | + | 109567 | 0.67 | 0.871473 |
Target: 5'- uGGUCUgAGuuCCCGCCGCCCgaCAgCa -3' miRNA: 3'- gCUAGAgUU--GGGUGGCGGGgaGUgGc -5' |
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16220 | 5' | -58.2 | NC_004065.1 | + | 166938 | 0.67 | 0.871473 |
Target: 5'- aGGUC-CAACgC-CCGUCgCUCGCCGg -3' miRNA: 3'- gCUAGaGUUGgGuGGCGGgGAGUGGC- -5' |
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16220 | 5' | -58.2 | NC_004065.1 | + | 163370 | 0.67 | 0.871473 |
Target: 5'- uCGAacaCUCGccgggcGCCCACCGCgCCgaaGCCGa -3' miRNA: 3'- -GCUa--GAGU------UGGGUGGCGgGGag-UGGC- -5' |
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16220 | 5' | -58.2 | NC_004065.1 | + | 148137 | 0.67 | 0.870774 |
Target: 5'- cCGAcCUCAgcacGCCCGCCGUgCCCgagaaccaucucuUCACCa -3' miRNA: 3'- -GCUaGAGU----UGGGUGGCG-GGG-------------AGUGGc -5' |
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16220 | 5' | -58.2 | NC_004065.1 | + | 88364 | 0.67 | 0.869372 |
Target: 5'- cCGcUCUCGuccgcggccgcggcACcgCCACCGCCCUccgUCGCCGa -3' miRNA: 3'- -GCuAGAGU--------------UG--GGUGGCGGGG---AGUGGC- -5' |
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16220 | 5' | -58.2 | NC_004065.1 | + | 1692 | 0.67 | 0.864402 |
Target: 5'- aGGUCguucCGuacguCCCACCGCCCaaagCACCc -3' miRNA: 3'- gCUAGa---GUu----GGGUGGCGGGga--GUGGc -5' |
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16220 | 5' | -58.2 | NC_004065.1 | + | 120898 | 0.67 | 0.864402 |
Target: 5'- ----gUC-ACCCGCCGUCCC-CGCCa -3' miRNA: 3'- gcuagAGuUGGGUGGCGGGGaGUGGc -5' |
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16220 | 5' | -58.2 | NC_004065.1 | + | 59104 | 0.67 | 0.864402 |
Target: 5'- ---aCUCGACCCgauacuauGCCGCCCUg-ACCGu -3' miRNA: 3'- gcuaGAGUUGGG--------UGGCGGGGagUGGC- -5' |
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16220 | 5' | -58.2 | NC_004065.1 | + | 187192 | 0.67 | 0.857142 |
Target: 5'- gGGUCUCGACCgACC-CUCCgCACgGg -3' miRNA: 3'- gCUAGAGUUGGgUGGcGGGGaGUGgC- -5' |
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16220 | 5' | -58.2 | NC_004065.1 | + | 200026 | 0.67 | 0.854928 |
Target: 5'- aCGGUCgcgCAGCCUcuggcgauaccacuGCCGCCgCCgcCGCCGc -3' miRNA: 3'- -GCUAGa--GUUGGG--------------UGGCGG-GGa-GUGGC- -5' |
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16220 | 5' | -58.2 | NC_004065.1 | + | 19826 | 0.68 | 0.849698 |
Target: 5'- aCGGUCUCAAgCa--CGCUCCUC-CCGu -3' miRNA: 3'- -GCUAGAGUUgGgugGCGGGGAGuGGC- -5' |
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16220 | 5' | -58.2 | NC_004065.1 | + | 207717 | 0.68 | 0.849698 |
Target: 5'- gGGUCgUCAACgUCACCGUCCacccCACCGa -3' miRNA: 3'- gCUAG-AGUUG-GGUGGCGGGga--GUGGC- -5' |
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16220 | 5' | -58.2 | NC_004065.1 | + | 147690 | 0.68 | 0.848188 |
Target: 5'- gCGAUCgucagCGACCCACCGgCUCggaugagcuggaCGCCGc -3' miRNA: 3'- -GCUAGa----GUUGGGUGGCgGGGa-----------GUGGC- -5' |
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16220 | 5' | -58.2 | NC_004065.1 | + | 163892 | 0.68 | 0.842076 |
Target: 5'- cCGGUCcgCGGCCCAgCGCgCCagCGCCu -3' miRNA: 3'- -GCUAGa-GUUGGGUgGCGgGGa-GUGGc -5' |
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16220 | 5' | -58.2 | NC_004065.1 | + | 32616 | 0.68 | 0.842076 |
Target: 5'- aGAUCUaaUAACCC-UCGgCCgUCACCGg -3' miRNA: 3'- gCUAGA--GUUGGGuGGCgGGgAGUGGC- -5' |
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16220 | 5' | -58.2 | NC_004065.1 | + | 113650 | 0.68 | 0.842076 |
Target: 5'- uCGAguaUCUCAGCgCCGgguuccCCGCCCuCUCGCUc -3' miRNA: 3'- -GCU---AGAGUUG-GGU------GGCGGG-GAGUGGc -5' |
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16220 | 5' | -58.2 | NC_004065.1 | + | 109606 | 0.68 | 0.834282 |
Target: 5'- cCGcgCUCGACCCccggGCCGCggugCCCacCACCGu -3' miRNA: 3'- -GCuaGAGUUGGG----UGGCG----GGGa-GUGGC- -5' |
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16220 | 5' | -58.2 | NC_004065.1 | + | 48897 | 0.68 | 0.834282 |
Target: 5'- aCGuuUCUCucCCCGCCGCCgC-CACCc -3' miRNA: 3'- -GCu-AGAGuuGGGUGGCGGgGaGUGGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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