miRNA display CGI


Results 1 - 20 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16220 5' -58.2 NC_004065.1 + 1023 0.81 0.209043
Target:  5'- gCGAUCUCGcUCCGCgCGCuCCCUCGCCGu -3'
miRNA:   3'- -GCUAGAGUuGGGUG-GCG-GGGAGUGGC- -5'
16220 5' -58.2 NC_004065.1 + 1692 0.67 0.864402
Target:  5'- aGGUCguucCGuacguCCCACCGCCCaaagCACCc -3'
miRNA:   3'- gCUAGa---GUu----GGGUGGCGGGga--GUGGc -5'
16220 5' -58.2 NC_004065.1 + 4643 0.68 0.834282
Target:  5'- ----aUCAGCgCCAgCGCCCC-CGCCGc -3'
miRNA:   3'- gcuagAGUUG-GGUgGCGGGGaGUGGC- -5'
16220 5' -58.2 NC_004065.1 + 15511 0.67 0.876307
Target:  5'- uCGAUcCUCAacaacaccguuuccACCgACCGUCCCgCACCc -3'
miRNA:   3'- -GCUA-GAGU--------------UGGgUGGCGGGGaGUGGc -5'
16220 5' -58.2 NC_004065.1 + 18064 0.7 0.69858
Target:  5'- uGAUCUCGACgauggcggcagcgaCCGCCGCagCCUCgugGCCGg -3'
miRNA:   3'- gCUAGAGUUG--------------GGUGGCGg-GGAG---UGGC- -5'
16220 5' -58.2 NC_004065.1 + 19826 0.68 0.849698
Target:  5'- aCGGUCUCAAgCa--CGCUCCUC-CCGu -3'
miRNA:   3'- -GCUAGAGUUgGgugGCGGGGAGuGGC- -5'
16220 5' -58.2 NC_004065.1 + 28931 0.66 0.903836
Target:  5'- uCGGUUcaaggaAAgCCGCCGCCuCCgUCGCCGg -3'
miRNA:   3'- -GCUAGag----UUgGGUGGCGG-GG-AGUGGC- -5'
16220 5' -58.2 NC_004065.1 + 29342 0.68 0.834282
Target:  5'- --cUCUCAugUCAcCCGCCCCUCuCUc -3'
miRNA:   3'- gcuAGAGUugGGU-GGCGGGGAGuGGc -5'
16220 5' -58.2 NC_004065.1 + 29462 0.69 0.792951
Target:  5'- --uUCUCcACCCguguucccgcuGCCGCCCgUCGCCc -3'
miRNA:   3'- gcuAGAGuUGGG-----------UGGCGGGgAGUGGc -5'
16220 5' -58.2 NC_004065.1 + 32616 0.68 0.842076
Target:  5'- aGAUCUaaUAACCC-UCGgCCgUCACCGg -3'
miRNA:   3'- gCUAGA--GUUGGGuGGCgGGgAGUGGC- -5'
16220 5' -58.2 NC_004065.1 + 38791 0.72 0.604605
Target:  5'- aCGGUCUgGcgcccgcagaGCCCcauCCGCCUCUCGCUGa -3'
miRNA:   3'- -GCUAGAgU----------UGGGu--GGCGGGGAGUGGC- -5'
16220 5' -58.2 NC_004065.1 + 39923 0.71 0.691876
Target:  5'- --uUCUCAACaaguaGCCGCCCC-CACCu -3'
miRNA:   3'- gcuAGAGUUGgg---UGGCGGGGaGUGGc -5'
16220 5' -58.2 NC_004065.1 + 45144 0.67 0.889582
Target:  5'- cCGAuccucUCUCGuucccggcguCCCGCCGCCCgCUCgacucgaucccucgGCCGa -3'
miRNA:   3'- -GCU-----AGAGUu---------GGGUGGCGGG-GAG--------------UGGC- -5'
16220 5' -58.2 NC_004065.1 + 47505 0.68 0.809928
Target:  5'- -cAUCUUGAUugggaCCACCGCCCCUauugggacCACCGc -3'
miRNA:   3'- gcUAGAGUUG-----GGUGGCGGGGA--------GUGGC- -5'
16220 5' -58.2 NC_004065.1 + 48897 0.68 0.834282
Target:  5'- aCGuuUCUCucCCCGCCGCCgC-CACCc -3'
miRNA:   3'- -GCu-AGAGuuGGGUGGCGGgGaGUGGc -5'
16220 5' -58.2 NC_004065.1 + 50338 0.66 0.920744
Target:  5'- aGAUCUgcaacagcggCAGCUucuucuggCACUGCUCCUCGCCc -3'
miRNA:   3'- gCUAGA----------GUUGG--------GUGGCGGGGAGUGGc -5'
16220 5' -58.2 NC_004065.1 + 59104 0.67 0.864402
Target:  5'- ---aCUCGACCCgauacuauGCCGCCCUg-ACCGu -3'
miRNA:   3'- gcuaGAGUUGGG--------UGGCGGGGagUGGC- -5'
16220 5' -58.2 NC_004065.1 + 62597 0.73 0.585242
Target:  5'- aGGUU--AGCgCCGCCGCCCC-CGCCGg -3'
miRNA:   3'- gCUAGagUUG-GGUGGCGGGGaGUGGC- -5'
16220 5' -58.2 NC_004065.1 + 63872 0.67 0.885028
Target:  5'- aGAcgUCGGCgCCGCUGCCgCCggCGCCGa -3'
miRNA:   3'- gCUagAGUUG-GGUGGCGG-GGa-GUGGC- -5'
16220 5' -58.2 NC_004065.1 + 65906 0.68 0.815735
Target:  5'- uCGAUCUCGGCaga-CGCCCCggucucgguuaccgUCGCCGu -3'
miRNA:   3'- -GCUAGAGUUGggugGCGGGG--------------AGUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.