miRNA display CGI


Results 21 - 40 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16220 5' -58.2 NC_004065.1 + 78341 0.66 0.909686
Target:  5'- aCGAUUUCAGCCuCGUgGaCCCCagcuUCACCGu -3'
miRNA:   3'- -GCUAGAGUUGG-GUGgC-GGGG----AGUGGC- -5'
16220 5' -58.2 NC_004065.1 + 80969 0.67 0.885028
Target:  5'- cCGAUCg--GCCUGCCGCCgCCgucgUCGCCc -3'
miRNA:   3'- -GCUAGaguUGGGUGGCGG-GG----AGUGGc -5'
16220 5' -58.2 NC_004065.1 + 81146 0.69 0.757487
Target:  5'- aGGUUUCGucCCCcUCGCCCCcCGCCGc -3'
miRNA:   3'- gCUAGAGUu-GGGuGGCGGGGaGUGGC- -5'
16220 5' -58.2 NC_004065.1 + 85946 0.67 0.871473
Target:  5'- cCGAUCUCA--UCGCCGUCCUcgacgCGCCa -3'
miRNA:   3'- -GCUAGAGUugGGUGGCGGGGa----GUGGc -5'
16220 5' -58.2 NC_004065.1 + 86751 0.74 0.518724
Target:  5'- ---cCUCGGCCCuugaagcuGCCGCCCC-CGCCGc -3'
miRNA:   3'- gcuaGAGUUGGG--------UGGCGGGGaGUGGC- -5'
16220 5' -58.2 NC_004065.1 + 86951 0.69 0.792951
Target:  5'- aGAUucgCUCGucGCCCccgaAgCGCCCCUCGCCc -3'
miRNA:   3'- gCUA---GAGU--UGGG----UgGCGGGGAGUGGc -5'
16220 5' -58.2 NC_004065.1 + 87230 0.74 0.518724
Target:  5'- uGAUCUCGAagaUgGCCGCCCCcggCGCCa -3'
miRNA:   3'- gCUAGAGUUg--GgUGGCGGGGa--GUGGc -5'
16220 5' -58.2 NC_004065.1 + 87349 0.66 0.903836
Target:  5'- cCGAUaucgCUCAcucCCCcUCGCCCCUCGgCCa -3'
miRNA:   3'- -GCUA----GAGUu--GGGuGGCGGGGAGU-GGc -5'
16220 5' -58.2 NC_004065.1 + 87473 0.71 0.688995
Target:  5'- aGAUCUCcgGACCCGCCaccgggcagauaucGCacaaCCUCGCCa -3'
miRNA:   3'- gCUAGAG--UUGGGUGG--------------CGg---GGAGUGGc -5'
16220 5' -58.2 NC_004065.1 + 88132 0.66 0.911966
Target:  5'- uGAUUUCAACgaGCuuuaauagaaaggggCGCCCgCUCGCCGg -3'
miRNA:   3'- gCUAGAGUUGggUG---------------GCGGG-GAGUGGC- -5'
16220 5' -58.2 NC_004065.1 + 88364 0.67 0.869372
Target:  5'- cCGcUCUCGuccgcggccgcggcACcgCCACCGCCCUccgUCGCCGa -3'
miRNA:   3'- -GCuAGAGU--------------UG--GGUGGCGGGG---AGUGGC- -5'
16220 5' -58.2 NC_004065.1 + 90105 0.66 0.920744
Target:  5'- aCGAagUUCAACCCGCUGgCgC-CGCCGg -3'
miRNA:   3'- -GCUa-GAGUUGGGUGGCgGgGaGUGGC- -5'
16220 5' -58.2 NC_004065.1 + 90692 0.72 0.592975
Target:  5'- uGGUCUCccgcaugcguuUCCugCGCUCCUCGCCGu -3'
miRNA:   3'- gCUAGAGuu---------GGGugGCGGGGAGUGGC- -5'
16220 5' -58.2 NC_004065.1 + 91022 0.66 0.915323
Target:  5'- gCGGUC-CAuggCCACCGUCCCgagcucguagCACCGc -3'
miRNA:   3'- -GCUAGaGUug-GGUGGCGGGGa---------GUGGC- -5'
16220 5' -58.2 NC_004065.1 + 93022 0.7 0.748351
Target:  5'- gGAUCUCGucGCCCucGCUGUUCCUggCGCCGa -3'
miRNA:   3'- gCUAGAGU--UGGG--UGGCGGGGA--GUGGC- -5'
16220 5' -58.2 NC_004065.1 + 93601 0.66 0.903836
Target:  5'- cCGAcCUCGGCUCACCggGCCCCcaggACCa -3'
miRNA:   3'- -GCUaGAGUUGGGUGG--CGGGGag--UGGc -5'
16220 5' -58.2 NC_004065.1 + 93696 0.66 0.909686
Target:  5'- cCGAaCU-GACCCACCgGCUCCUUAUUGa -3'
miRNA:   3'- -GCUaGAgUUGGGUGG-CGGGGAGUGGC- -5'
16220 5' -58.2 NC_004065.1 + 94890 0.66 0.920744
Target:  5'- -cGUCgUCAucACCCGCCGCgCC-CGCCc -3'
miRNA:   3'- gcUAG-AGU--UGGGUGGCGgGGaGUGGc -5'
16220 5' -58.2 NC_004065.1 + 96616 0.66 0.915323
Target:  5'- aGAUCUgAcCCCuuCGUCCUcgUCGCCGg -3'
miRNA:   3'- gCUAGAgUuGGGugGCGGGG--AGUGGC- -5'
16220 5' -58.2 NC_004065.1 + 98722 0.69 0.783387
Target:  5'- --uUCUCGACCaccuugaCGCCGUCgCUCACCa -3'
miRNA:   3'- gcuAGAGUUGG-------GUGGCGGgGAGUGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.