miRNA display CGI


Results 41 - 60 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16220 5' -58.2 NC_004065.1 + 99291 0.66 0.920744
Target:  5'- -cGUC-CGAuCCCACCGCCCuCUCcuCCu -3'
miRNA:   3'- gcUAGaGUU-GGGUGGCGGG-GAGu-GGc -5'
16220 5' -58.2 NC_004065.1 + 99844 0.69 0.766523
Target:  5'- -cGUUUCAGCgUCugCGCCCCgaUCGCCGc -3'
miRNA:   3'- gcUAGAGUUG-GGugGCGGGG--AGUGGC- -5'
16220 5' -58.2 NC_004065.1 + 101635 0.7 0.748351
Target:  5'- ---gCUCGGCCCccacaGCCGgCUCUCGCCGc -3'
miRNA:   3'- gcuaGAGUUGGG-----UGGCgGGGAGUGGC- -5'
16220 5' -58.2 NC_004065.1 + 102352 0.7 0.733545
Target:  5'- uGGUCgugCAAcaacgugaacaugguCCCGCCGCCCUcggCGCCGc -3'
miRNA:   3'- gCUAGa--GUU---------------GGGUGGCGGGGa--GUGGC- -5'
16220 5' -58.2 NC_004065.1 + 105039 0.66 0.920744
Target:  5'- gCGcgCUgcaCGACCCG-CGCCUCUgGCCGc -3'
miRNA:   3'- -GCuaGA---GUUGGGUgGCGGGGAgUGGC- -5'
16220 5' -58.2 NC_004065.1 + 107846 0.66 0.909686
Target:  5'- cCGAggagCUCAacaaACUCACCGCCCUguucgUCAugauCCGg -3'
miRNA:   3'- -GCUa---GAGU----UGGGUGGCGGGG-----AGU----GGC- -5'
16220 5' -58.2 NC_004065.1 + 109567 0.67 0.871473
Target:  5'- uGGUCUgAGuuCCCGCCGCCCgaCAgCa -3'
miRNA:   3'- gCUAGAgUU--GGGUGGCGGGgaGUgGc -5'
16220 5' -58.2 NC_004065.1 + 109606 0.68 0.834282
Target:  5'- cCGcgCUCGACCCccggGCCGCggugCCCacCACCGu -3'
miRNA:   3'- -GCuaGAGUUGGG----UGGCG----GGGa-GUGGC- -5'
16220 5' -58.2 NC_004065.1 + 113204 0.66 0.909686
Target:  5'- -cAUCaCGGCCaCGCUGCCCCggucggUACCGg -3'
miRNA:   3'- gcUAGaGUUGG-GUGGCGGGGa-----GUGGC- -5'
16220 5' -58.2 NC_004065.1 + 113650 0.68 0.842076
Target:  5'- uCGAguaUCUCAGCgCCGgguuccCCGCCCuCUCGCUc -3'
miRNA:   3'- -GCU---AGAGUUG-GGU------GGCGGG-GAGUGGc -5'
16220 5' -58.2 NC_004065.1 + 113864 0.66 0.915323
Target:  5'- gGAUCcgaGACCUACCgacccgGCCCCgagcCGCCGc -3'
miRNA:   3'- gCUAGag-UUGGGUGG------CGGGGa---GUGGC- -5'
16220 5' -58.2 NC_004065.1 + 117461 0.67 0.885028
Target:  5'- -cGUC-CGGCuCCGCgGCCgCUCGCCGc -3'
miRNA:   3'- gcUAGaGUUG-GGUGgCGGgGAGUGGC- -5'
16220 5' -58.2 NC_004065.1 + 119181 0.66 0.897774
Target:  5'- uCGAcgCgggCGGCCCG-CGCCCCgCACUGg -3'
miRNA:   3'- -GCUa-Ga--GUUGGGUgGCGGGGaGUGGC- -5'
16220 5' -58.2 NC_004065.1 + 120898 0.67 0.864402
Target:  5'- ----gUC-ACCCGCCGUCCC-CGCCa -3'
miRNA:   3'- gcuagAGuUGGGUGGCGGGGaGUGGc -5'
16220 5' -58.2 NC_004065.1 + 126311 0.66 0.915323
Target:  5'- aCGAUCac-GCCCGCCaggcGCUCCcCGCCGc -3'
miRNA:   3'- -GCUAGaguUGGGUGG----CGGGGaGUGGC- -5'
16220 5' -58.2 NC_004065.1 + 127383 0.68 0.834282
Target:  5'- aGAUCUCGccguucgaggACUC-CCGCCUCUCccagGCCGu -3'
miRNA:   3'- gCUAGAGU----------UGGGuGGCGGGGAG----UGGC- -5'
16220 5' -58.2 NC_004065.1 + 131616 0.77 0.370472
Target:  5'- -cAUCUCAugCCGCCGCCacucucaucgcccuCCUCGCCa -3'
miRNA:   3'- gcUAGAGUugGGUGGCGG--------------GGAGUGGc -5'
16220 5' -58.2 NC_004065.1 + 133054 0.66 0.897774
Target:  5'- gGGuUCUCuGCCCACgGuUCCCUCGgCGa -3'
miRNA:   3'- gCU-AGAGuUGGGUGgC-GGGGAGUgGC- -5'
16220 5' -58.2 NC_004065.1 + 135628 0.67 0.885028
Target:  5'- gGGUCUaCGGCgCCACCaGCCgacagCUCGCCGc -3'
miRNA:   3'- gCUAGA-GUUG-GGUGG-CGGg----GAGUGGC- -5'
16220 5' -58.2 NC_004065.1 + 138257 0.67 0.885028
Target:  5'- aCGAUCUCuccAGCCuCGCC-CCCgUCGCUc -3'
miRNA:   3'- -GCUAGAG---UUGG-GUGGcGGGgAGUGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.