miRNA display CGI


Results 1 - 20 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16220 5' -58.2 NC_004065.1 + 222583 0.66 0.920744
Target:  5'- aGGUCUCcucGCCCGCUGCCacgaUgGCCu -3'
miRNA:   3'- gCUAGAGu--UGGGUGGCGGgg--AgUGGc -5'
16220 5' -58.2 NC_004065.1 + 218188 0.73 0.537469
Target:  5'- uGAUCUUGAUCCGuCCGaCCCCgcCACCGa -3'
miRNA:   3'- gCUAGAGUUGGGU-GGC-GGGGa-GUGGC- -5'
16220 5' -58.2 NC_004065.1 + 207855 1.08 0.003585
Target:  5'- cCGAUCUCAACCCACCGCCCCUCACCGu -3'
miRNA:   3'- -GCUAGAGUUGGGUGGCGGGGAGUGGC- -5'
16220 5' -58.2 NC_004065.1 + 207717 0.68 0.849698
Target:  5'- gGGUCgUCAACgUCACCGUCCacccCACCGa -3'
miRNA:   3'- gCUAG-AGUUG-GGUGGCGGGga--GUGGC- -5'
16220 5' -58.2 NC_004065.1 + 206416 0.67 0.891504
Target:  5'- ----gUCcACCCGCCuGCCCgcCUCACCGc -3'
miRNA:   3'- gcuagAGuUGGGUGG-CGGG--GAGUGGC- -5'
16220 5' -58.2 NC_004065.1 + 205961 0.78 0.321336
Target:  5'- uCGAgccgCUCAugCUGCCGCCgCUCACCa -3'
miRNA:   3'- -GCUa---GAGUugGGUGGCGGgGAGUGGc -5'
16220 5' -58.2 NC_004065.1 + 202170 0.71 0.643498
Target:  5'- -cAUCUCGACCaguUCGCCCCgcggCACCa -3'
miRNA:   3'- gcUAGAGUUGGgu-GGCGGGGa---GUGGc -5'
16220 5' -58.2 NC_004065.1 + 200304 0.66 0.920744
Target:  5'- gGAUCUCAucguCCUgggcggcguCCGCCgCUCgACCGg -3'
miRNA:   3'- gCUAGAGUu---GGGu--------GGCGGgGAG-UGGC- -5'
16220 5' -58.2 NC_004065.1 + 200026 0.67 0.854928
Target:  5'- aCGGUCgcgCAGCCUcuggcgauaccacuGCCGCCgCCgcCGCCGc -3'
miRNA:   3'- -GCUAGa--GUUGGG--------------UGGCGG-GGa-GUGGC- -5'
16220 5' -58.2 NC_004065.1 + 198566 0.69 0.775451
Target:  5'- gCGGUCUCccuGGCuaCCGCCGUCCUUCAgCCa -3'
miRNA:   3'- -GCUAGAG---UUG--GGUGGCGGGGAGU-GGc -5'
16220 5' -58.2 NC_004065.1 + 198343 0.7 0.72981
Target:  5'- aGAUCccccUCAGCUCGCCgggGUCCUUCGCCa -3'
miRNA:   3'- gCUAG----AGUUGGGUGG---CGGGGAGUGGc -5'
16220 5' -58.2 NC_004065.1 + 194398 0.69 0.775451
Target:  5'- cCGAUgaCAucCCCGCCGCCgCCgcCGCCGu -3'
miRNA:   3'- -GCUAgaGUu-GGGUGGCGG-GGa-GUGGC- -5'
16220 5' -58.2 NC_004065.1 + 191384 0.67 0.878349
Target:  5'- aCGA-CgaaGACUCGgCGCaCCCUCGCCGu -3'
miRNA:   3'- -GCUaGag-UUGGGUgGCG-GGGAGUGGC- -5'
16220 5' -58.2 NC_004065.1 + 188895 0.69 0.792951
Target:  5'- aCGAgaagCUCAcggcccgacgACCCggacaccuGCCGCUCCUCACUa -3'
miRNA:   3'- -GCUa---GAGU----------UGGG--------UGGCGGGGAGUGGc -5'
16220 5' -58.2 NC_004065.1 + 187552 0.69 0.792088
Target:  5'- uGAUCUCAcagacacACUcuauccaguuuuCACCGUCCUUCACCu -3'
miRNA:   3'- gCUAGAGU-------UGG------------GUGGCGGGGAGUGGc -5'
16220 5' -58.2 NC_004065.1 + 187192 0.67 0.857142
Target:  5'- gGGUCUCGACCgACC-CUCCgCACgGg -3'
miRNA:   3'- gCUAGAGUUGGgUGGcGGGGaGUGgC- -5'
16220 5' -58.2 NC_004065.1 + 182687 0.66 0.915323
Target:  5'- --cUCUCAuguuggccAUCCGuuGCCCCcCGCCGc -3'
miRNA:   3'- gcuAGAGU--------UGGGUggCGGGGaGUGGC- -5'
16220 5' -58.2 NC_004065.1 + 179335 0.66 0.909686
Target:  5'- aGAUCagcaggagCAGCCCAUgGa-CCUCACCGu -3'
miRNA:   3'- gCUAGa-------GUUGGGUGgCggGGAGUGGC- -5'
16220 5' -58.2 NC_004065.1 + 178231 0.66 0.915323
Target:  5'- gCGuGUCUCA-UCCACUGCCuuCCUCACa- -3'
miRNA:   3'- -GC-UAGAGUuGGGUGGCGG--GGAGUGgc -5'
16220 5' -58.2 NC_004065.1 + 177933 0.71 0.672607
Target:  5'- uCGGUCuUCGGCgCCGCCGCUUCUC-CUGg -3'
miRNA:   3'- -GCUAG-AGUUG-GGUGGCGGGGAGuGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.