miRNA display CGI


Results 21 - 40 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16220 5' -58.2 NC_004065.1 + 177510 0.69 0.766523
Target:  5'- gCGGcacUCUCuGCaCCACCGCCaCCgcgCGCCa -3'
miRNA:   3'- -GCU---AGAGuUG-GGUGGCGG-GGa--GUGGc -5'
16220 5' -58.2 NC_004065.1 + 171430 0.69 0.784263
Target:  5'- uCGAUCUCGACuCCGCCGUCgucggcgagCUCAuCCGc -3'
miRNA:   3'- -GCUAGAGUUG-GGUGGCGGg--------GAGU-GGC- -5'
16220 5' -58.2 NC_004065.1 + 168863 0.66 0.920744
Target:  5'- gCGGUUcCAACCCgaucuucgacGCCGUUUCUUACCGc -3'
miRNA:   3'- -GCUAGaGUUGGG----------UGGCGGGGAGUGGC- -5'
16220 5' -58.2 NC_004065.1 + 168799 0.67 0.878349
Target:  5'- --cUCUCcGCCCuCUGCuCCUUCGCCa -3'
miRNA:   3'- gcuAGAGuUGGGuGGCG-GGGAGUGGc -5'
16220 5' -58.2 NC_004065.1 + 166938 0.67 0.871473
Target:  5'- aGGUC-CAACgC-CCGUCgCUCGCCGg -3'
miRNA:   3'- gCUAGaGUUGgGuGGCGGgGAGUGGC- -5'
16220 5' -58.2 NC_004065.1 + 164676 0.67 0.890865
Target:  5'- uCGAUCcgacCGACCCacccgcagcugcuGCCGCCgCCgcCGCCGg -3'
miRNA:   3'- -GCUAGa---GUUGGG-------------UGGCGG-GGa-GUGGC- -5'
16220 5' -58.2 NC_004065.1 + 163892 0.68 0.842076
Target:  5'- cCGGUCcgCGGCCCAgCGCgCCagCGCCu -3'
miRNA:   3'- -GCUAGa-GUUGGGUgGCGgGGa-GUGGc -5'
16220 5' -58.2 NC_004065.1 + 163370 0.67 0.871473
Target:  5'- uCGAacaCUCGccgggcGCCCACCGCgCCgaaGCCGa -3'
miRNA:   3'- -GCUa--GAGU------UGGGUGGCGgGGag-UGGC- -5'
16220 5' -58.2 NC_004065.1 + 162346 0.66 0.915323
Target:  5'- aGAUggagGGCCCGCCGCCgCCgcCGCCGc -3'
miRNA:   3'- gCUAgag-UUGGGUGGCGG-GGa-GUGGC- -5'
16220 5' -58.2 NC_004065.1 + 161981 0.66 0.903836
Target:  5'- uGAUCUCucGCUUcgACCGaCCCCUCguagcgACCGa -3'
miRNA:   3'- gCUAGAGu-UGGG--UGGC-GGGGAG------UGGC- -5'
16220 5' -58.2 NC_004065.1 + 161508 0.66 0.913093
Target:  5'- ---cCUCGGCCUccgggagaugcguCCGCCgCCUCACCu -3'
miRNA:   3'- gcuaGAGUUGGGu------------GGCGG-GGAGUGGc -5'
16220 5' -58.2 NC_004065.1 + 159907 0.66 0.909686
Target:  5'- uCGAUCg--GCgCCGCCGCCgCCgcuGCCGg -3'
miRNA:   3'- -GCUAGaguUG-GGUGGCGG-GGag-UGGC- -5'
16220 5' -58.2 NC_004065.1 + 159069 0.7 0.739123
Target:  5'- gCGAUCUgGACCgACCGCCgCgacCCGg -3'
miRNA:   3'- -GCUAGAgUUGGgUGGCGGgGaguGGC- -5'
16220 5' -58.2 NC_004065.1 + 155424 0.69 0.775451
Target:  5'- gGAaCUCGGCcgCCACCGCCaCCgacggCACCa -3'
miRNA:   3'- gCUaGAGUUG--GGUGGCGG-GGa----GUGGc -5'
16220 5' -58.2 NC_004065.1 + 155151 0.66 0.909686
Target:  5'- aGGUCggcugCGACcugcccgucuaCCACCGCCgCCUCAaCCu -3'
miRNA:   3'- gCUAGa----GUUG-----------GGUGGCGG-GGAGU-GGc -5'
16220 5' -58.2 NC_004065.1 + 154356 0.78 0.314434
Target:  5'- aGAa-UCAGCCCGCgGCCgCCUCGCCGa -3'
miRNA:   3'- gCUagAGUUGGGUGgCGG-GGAGUGGC- -5'
16220 5' -58.2 NC_004065.1 + 154229 0.68 0.818201
Target:  5'- aGGUgcCUCG--CCGCCGCuccCCCUCGCCGa -3'
miRNA:   3'- gCUA--GAGUugGGUGGCG---GGGAGUGGC- -5'
16220 5' -58.2 NC_004065.1 + 150663 0.7 0.739123
Target:  5'- aGAUCUCGaacuguuccagcGCCgCGCCGCCCUcgUCuCCGc -3'
miRNA:   3'- gCUAGAGU------------UGG-GUGGCGGGG--AGuGGC- -5'
16220 5' -58.2 NC_004065.1 + 148137 0.67 0.870774
Target:  5'- cCGAcCUCAgcacGCCCGCCGUgCCCgagaaccaucucuUCACCa -3'
miRNA:   3'- -GCUaGAGU----UGGGUGGCG-GGG-------------AGUGGc -5'
16220 5' -58.2 NC_004065.1 + 147690 0.68 0.848188
Target:  5'- gCGAUCgucagCGACCCACCGgCUCggaugagcuggaCGCCGc -3'
miRNA:   3'- -GCUAGa----GUUGGGUGGCgGGGa-----------GUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.