miRNA display CGI


Results 1 - 20 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16220 5' -58.2 NC_004065.1 + 113650 0.68 0.842076
Target:  5'- uCGAguaUCUCAGCgCCGgguuccCCGCCCuCUCGCUc -3'
miRNA:   3'- -GCU---AGAGUUG-GGU------GGCGGG-GAGUGGc -5'
16220 5' -58.2 NC_004065.1 + 81146 0.69 0.757487
Target:  5'- aGGUUUCGucCCCcUCGCCCCcCGCCGc -3'
miRNA:   3'- gCUAGAGUu-GGGuGGCGGGGaGUGGC- -5'
16220 5' -58.2 NC_004065.1 + 99844 0.69 0.766523
Target:  5'- -cGUUUCAGCgUCugCGCCCCgaUCGCCGc -3'
miRNA:   3'- gcUAGAGUUG-GGugGCGGGG--AGUGGC- -5'
16220 5' -58.2 NC_004065.1 + 177510 0.69 0.766523
Target:  5'- gCGGcacUCUCuGCaCCACCGCCaCCgcgCGCCa -3'
miRNA:   3'- -GCU---AGAGuUG-GGUGGCGG-GGa--GUGGc -5'
16220 5' -58.2 NC_004065.1 + 187552 0.69 0.792088
Target:  5'- uGAUCUCAcagacacACUcuauccaguuuuCACCGUCCUUCACCu -3'
miRNA:   3'- gCUAGAGU-------UGG------------GUGGCGGGGAGUGGc -5'
16220 5' -58.2 NC_004065.1 + 86951 0.69 0.792951
Target:  5'- aGAUucgCUCGucGCCCccgaAgCGCCCCUCGCCc -3'
miRNA:   3'- gCUA---GAGU--UGGG----UgGCGGGGAGUGGc -5'
16220 5' -58.2 NC_004065.1 + 127383 0.68 0.834282
Target:  5'- aGAUCUCGccguucgaggACUC-CCGCCUCUCccagGCCGu -3'
miRNA:   3'- gCUAGAGU----------UGGGuGGCGGGGAG----UGGC- -5'
16220 5' -58.2 NC_004065.1 + 109606 0.68 0.834282
Target:  5'- cCGcgCUCGACCCccggGCCGCggugCCCacCACCGu -3'
miRNA:   3'- -GCuaGAGUUGGG----UGGCG----GGGa-GUGGC- -5'
16220 5' -58.2 NC_004065.1 + 48897 0.68 0.834282
Target:  5'- aCGuuUCUCucCCCGCCGCCgC-CACCc -3'
miRNA:   3'- -GCu-AGAGuuGGGUGGCGGgGaGUGGc -5'
16220 5' -58.2 NC_004065.1 + 159069 0.7 0.739123
Target:  5'- gCGAUCUgGACCgACCGCCgCgacCCGg -3'
miRNA:   3'- -GCUAGAgUUGGgUGGCGGgGaguGGC- -5'
16220 5' -58.2 NC_004065.1 + 150663 0.7 0.739123
Target:  5'- aGAUCUCGaacuguuccagcGCCgCGCCGCCCUcgUCuCCGc -3'
miRNA:   3'- gCUAGAGU------------UGG-GUGGCGGGG--AGuGGC- -5'
16220 5' -58.2 NC_004065.1 + 198343 0.7 0.72981
Target:  5'- aGAUCccccUCAGCUCGCCgggGUCCUUCGCCa -3'
miRNA:   3'- gCUAG----AGUUGGGUGG---CGGGGAGUGGc -5'
16220 5' -58.2 NC_004065.1 + 86751 0.74 0.518724
Target:  5'- ---cCUCGGCCCuugaagcuGCCGCCCC-CGCCGc -3'
miRNA:   3'- gcuaGAGUUGGG--------UGGCGGGGaGUGGC- -5'
16220 5' -58.2 NC_004065.1 + 218188 0.73 0.537469
Target:  5'- uGAUCUUGAUCCGuCCGaCCCCgcCACCGa -3'
miRNA:   3'- gCUAGAGUUGGGU-GGC-GGGGa-GUGGC- -5'
16220 5' -58.2 NC_004065.1 + 62597 0.73 0.585242
Target:  5'- aGGUU--AGCgCCGCCGCCCC-CGCCGg -3'
miRNA:   3'- gCUAGagUUG-GGUGGCGGGGaGUGGC- -5'
16220 5' -58.2 NC_004065.1 + 38791 0.72 0.604605
Target:  5'- aCGGUCUgGcgcccgcagaGCCCcauCCGCCUCUCGCUGa -3'
miRNA:   3'- -GCUAGAgU----------UGGGu--GGCGGGGAGUGGC- -5'
16220 5' -58.2 NC_004065.1 + 202170 0.71 0.643498
Target:  5'- -cAUCUCGACCaguUCGCCCCgcggCACCa -3'
miRNA:   3'- gcUAGAGUUGGgu-GGCGGGGa---GUGGc -5'
16220 5' -58.2 NC_004065.1 + 87473 0.71 0.688995
Target:  5'- aGAUCUCcgGACCCGCCaccgggcagauaucGCacaaCCUCGCCa -3'
miRNA:   3'- gCUAGAG--UUGGGUGG--------------CGg---GGAGUGGc -5'
16220 5' -58.2 NC_004065.1 + 39923 0.71 0.691876
Target:  5'- --uUCUCAACaaguaGCCGCCCC-CACCu -3'
miRNA:   3'- gcuAGAGUUGgg---UGGCGGGGaGUGGc -5'
16220 5' -58.2 NC_004065.1 + 18064 0.7 0.69858
Target:  5'- uGAUCUCGACgauggcggcagcgaCCGCCGCagCCUCgugGCCGg -3'
miRNA:   3'- gCUAGAGUUG--------------GGUGGCGg-GGAG---UGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.