miRNA display CGI


Results 41 - 60 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16220 5' -58.2 NC_004065.1 + 86951 0.69 0.792951
Target:  5'- aGAUucgCUCGucGCCCccgaAgCGCCCCUCGCCc -3'
miRNA:   3'- gCUA---GAGU--UGGG----UgGCGGGGAGUGGc -5'
16220 5' -58.2 NC_004065.1 + 187552 0.69 0.792088
Target:  5'- uGAUCUCAcagacacACUcuauccaguuuuCACCGUCCUUCACCu -3'
miRNA:   3'- gCUAGAGU-------UGG------------GUGGCGGGGAGUGGc -5'
16220 5' -58.2 NC_004065.1 + 177510 0.69 0.766523
Target:  5'- gCGGcacUCUCuGCaCCACCGCCaCCgcgCGCCa -3'
miRNA:   3'- -GCU---AGAGuUG-GGUGGCGG-GGa--GUGGc -5'
16220 5' -58.2 NC_004065.1 + 99844 0.69 0.766523
Target:  5'- -cGUUUCAGCgUCugCGCCCCgaUCGCCGc -3'
miRNA:   3'- gcUAGAGUUG-GGugGCGGGG--AGUGGC- -5'
16220 5' -58.2 NC_004065.1 + 81146 0.69 0.757487
Target:  5'- aGGUUUCGucCCCcUCGCCCCcCGCCGc -3'
miRNA:   3'- gCUAGAGUu-GGGuGGCGGGGaGUGGC- -5'
16220 5' -58.2 NC_004065.1 + 93022 0.7 0.748351
Target:  5'- gGAUCUCGucGCCCucGCUGUUCCUggCGCCGa -3'
miRNA:   3'- gCUAGAGU--UGGG--UGGCGGGGA--GUGGC- -5'
16220 5' -58.2 NC_004065.1 + 155424 0.69 0.775451
Target:  5'- gGAaCUCGGCcgCCACCGCCaCCgacggCACCa -3'
miRNA:   3'- gCUaGAGUUG--GGUGGCGG-GGa----GUGGc -5'
16220 5' -58.2 NC_004065.1 + 194398 0.69 0.775451
Target:  5'- cCGAUgaCAucCCCGCCGCCgCCgcCGCCGu -3'
miRNA:   3'- -GCUAgaGUu-GGGUGGCGG-GGa-GUGGC- -5'
16220 5' -58.2 NC_004065.1 + 198566 0.69 0.775451
Target:  5'- gCGGUCUCccuGGCuaCCGCCGUCCUUCAgCCa -3'
miRNA:   3'- -GCUAGAG---UUG--GGUGGCGGGGAGU-GGc -5'
16220 5' -58.2 NC_004065.1 + 98722 0.69 0.783387
Target:  5'- --uUCUCGACCaccuugaCGCCGUCgCUCACCa -3'
miRNA:   3'- gcuAGAGUUGG-------GUGGCGGgGAGUGGc -5'
16220 5' -58.2 NC_004065.1 + 171430 0.69 0.784263
Target:  5'- uCGAUCUCGACuCCGCCGUCgucggcgagCUCAuCCGc -3'
miRNA:   3'- -GCUAGAGUUG-GGUGGCGGg--------GAGU-GGC- -5'
16220 5' -58.2 NC_004065.1 + 101635 0.7 0.748351
Target:  5'- ---gCUCGGCCCccacaGCCGgCUCUCGCCGc -3'
miRNA:   3'- gcuaGAGUUGGG-----UGGCgGGGAGUGGC- -5'
16220 5' -58.2 NC_004065.1 + 102352 0.7 0.733545
Target:  5'- uGGUCgugCAAcaacgugaacaugguCCCGCCGCCCUcggCGCCGc -3'
miRNA:   3'- gCUAGa--GUU---------------GGGUGGCGGGGa--GUGGC- -5'
16220 5' -58.2 NC_004065.1 + 177933 0.71 0.672607
Target:  5'- uCGGUCuUCGGCgCCGCCGCUUCUC-CUGg -3'
miRNA:   3'- -GCUAG-AGUUG-GGUGGCGGGGAGuGGC- -5'
16220 5' -58.2 NC_004065.1 + 90692 0.72 0.592975
Target:  5'- uGGUCUCccgcaugcguuUCCugCGCUCCUCGCCGu -3'
miRNA:   3'- gCUAGAGuu---------GGGugGCGGGGAGUGGC- -5'
16220 5' -58.2 NC_004065.1 + 87230 0.74 0.518724
Target:  5'- uGAUCUCGAagaUgGCCGCCCCcggCGCCa -3'
miRNA:   3'- gCUAGAGUUg--GgUGGCGGGGa--GUGGc -5'
16220 5' -58.2 NC_004065.1 + 131616 0.77 0.370472
Target:  5'- -cAUCUCAugCCGCCGCCacucucaucgcccuCCUCGCCa -3'
miRNA:   3'- gcUAGAGUugGGUGGCGG--------------GGAGUGGc -5'
16220 5' -58.2 NC_004065.1 + 205961 0.78 0.321336
Target:  5'- uCGAgccgCUCAugCUGCCGCCgCUCACCa -3'
miRNA:   3'- -GCUa---GAGUugGGUGGCGGgGAGUGGc -5'
16220 5' -58.2 NC_004065.1 + 154356 0.78 0.314434
Target:  5'- aGAa-UCAGCCCGCgGCCgCCUCGCCGa -3'
miRNA:   3'- gCUagAGUUGGGUGgCGG-GGAGUGGC- -5'
16220 5' -58.2 NC_004065.1 + 168863 0.66 0.920744
Target:  5'- gCGGUUcCAACCCgaucuucgacGCCGUUUCUUACCGc -3'
miRNA:   3'- -GCUAGaGUUGGG----------UGGCGGGGAGUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.